Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6562-RB through 18771 annotations produced 1 hits



March 2006 (FlyBase/BDGP 5.3) (chr2R:17967675-17973272 (+) // 100.0 //):

Annotation Number : CG6562
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse :
Probeset : 1631427_s_at
Accessions : protein= EC:3.1.3.36 /// EC:3.1.3.56, nucleotide=
Interpro : 0007269 // neurotransmitter secretion // non-traceable author statement /// 0016311 // dephosphorylation // inferred fro
Homophila reports that CG6562 is a close match (3e-21) to human gene FIG4;KIAA0274;SAC3 (NP_055660), a gene associated with Charcot-Marie-Tooth disease, type 4J, 611228 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain814 364 of 4 5.10Up
Head320 194 of 4 2.00Up
Eye343 234 of 4 2.17Up
Thoracicoabdominal ganglion875 334 of 4 5.50Up
Salivary gland191 74 of 4 1.21Up
Crop266 74 of 4 1.70Up
Midgut132 14 of 4 0.80Down
Tubule191 34 of 4 1.20Up
Hindgut165 74 of 4 1.00None
Heart219 64 of 4 1.38Up
Fat body135 154 of 4 0.85None
Ovary244 104 of 4 1.50Up
Testis72 64 of 4 0.50Down
Male accessory glands162 64 of 4 1.00None
Virgin spermatheca170 204 of 4 1.07None
Mated spermatheca160 104 of 4 1.01None
Adult carcass94 34 of 4 0.60Down
Larval CNS348 154 of 4 2.20Up
Larval Salivary gland156 94 of 4 0.99None
Larval midgut117 164 of 4 0.74None
Larval tubule253 74 of 4 1.60Up
Larval hindgut235 74 of 4 1.49Up
Larval fat body140 104 of 4 0.90None
Larval trachea135 44 of 4 0.86Down
Larval carcass132 54 of 4 0.84Down
S2 cells (growing)363 64 of 4 2.29Up
Whole fly158 44 of 4

Looking for CG6562-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime