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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6578-RA through 18771 annotations produced 1 hits



phantom (phm):

Annotation Number : CG6578
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004959
Gbrowse : chrX:18579801-18582257 (+) // 100.0 //
Probeset : 1627188_at
Accessions : protein= NP_573319;, nucleotide= NM_133091;
Pathway : 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from ele
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0004959.
Homophila reports that CG6578 is a close match (2e-12) to human gene CA21H;CYP21;CYP21A2 (NP_000491), a gene associated with Adrenal hyperplasia, congenital, due to 21-hydroxylase deficiency (3);Hyperandrogenism, nonclassic type, due to 21-hydroxylase deficiency (3).
VDRC has 3 RNAi stocks for FBgn0004959 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10Down
Head9 ± 10 of 4 0.70None
Eye4 ± 20 of 4 0.33None
Thoracicoabdominal ganglion2 ± 00 of 4 0.20Down
Salivary gland7 ± 40 of 4 0.50None
Crop3 ± 10 of 4 0.30Down
Midgut2 ± 00 of 4 0.20Down
Tubule3 ± 00 of 4 0.20Down
Hindgut1 ± 00 of 4 0.10Down
Heart2 ± 10 of 4 0.17Down
Fat body1 ± 00 of 4 0.13Down
Ovary9 ± 11 of 4 0.70None
Testis1 ± 00 of 4 0.10Down
Male accessory glands4 ± 20 of 4 0.30None
Virgin spermatheca3 ± 10 of 4 0.26Down
Mated spermatheca1 ± 00 of 4 0.08Down
Adult carcass12 ± 41 of 4 0.90None
Larval CNS34 ± 174 of 4 2.53None
Larval Salivary gland3 ± 10 of 4 0.22Down
Larval midgut5 ± 20 of 4 0.37None
Larval tubule1 ± 00 of 4 0.10Down
Larval hindgut1 ± 00 of 4 0.09Down
Larval fat body18 ± 61 of 4 1.30None
Larval trachea3 ± 10 of 4 0.23Down
Larval carcass6 ± 10 of 4 0.44None
S2 cells (growing)2 ± 10 of 4 0.17Down
Whole fly13 ± 30 of 4

Looking for CG6578-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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