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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG6580-RA through 18771 annotations produced 1 hits

Jonah 65A (Jon65Aii):

Annotation Number : CG6580
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035666
Gbrowse : chr3L:6045449-6046291 (+) // 100.0 //
Probeset : 1641190_at
Accessions : protein= NP_648014;, nucleotide= NM_139757;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0035666.
Homophila reports that CG6580 is a close match (2e-11) to human gene CTRC;CLCR (NP_009203), a gene associated with {Pancreatitis, chronic, susceptibilty to}, 167800 (3).
VDRC has 2 RNAi stocks for FBgn0035666 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.00Down
Head5 10 of 4 0.00Down
Eye3 10 of 4 0.01Down
Thoracicoabdominal ganglion5 10 of 4 0.00Down
Salivary gland12 30 of 4 0.04Down
Crop4 20 of 4 0.00Down
Midgut2793 3704 of 4 8.90Up
Tubule5 00 of 4 0.00Down
Hindgut5 00 of 4 0.00Down
Heart1 00 of 4 0.00Down
Fat body4 40 of 4 0.02Down
Ovary4 11 of 4 0.00Down
Testis4 10 of 4 0.00Down
Male accessory glands4 10 of 4 0.00Down
Virgin spermatheca0 00 of 4 0.00Down
Mated spermatheca1 00 of 4 0.01Down
Adult carcass7 30 of 4 0.00Down
Larval CNS5 32 of 4 0.02Down
Larval Salivary gland3 10 of 4 0.01Down
Larval midgut6089 2424 of 419.46Up
Larval tubule8 31 of 4 0.00Down
Larval hindgut10 13 of 4 0.03Down
Larval fat body7 20 of 4 0.00Down
Larval trachea2 20 of 4 0.01Down
Larval carcass4 00 of 4 0.01Down
S2 cells (growing)6 01 of 4 0.02Down
Whole fly312 744 of 4

Looking for CG6580-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime