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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6592-RA through 18771 annotations produced 1 hits



(CG6592):

Annotation Number : CG6592
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035669
Gbrowse : chr3L:6053045-6054478 (+) // 100.0 //
Probeset : 1623835_at
Accessions : protein= NP_648016;, nucleotide= NM_139759;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0035669.
Homophila reports that CG6592 is a close match (8e-11) to human gene F7 (NP_000122), a gene associated with Factor VII deficiency (3);{Myocardial infarction, decreased susceptibility to} (3).
VDRC has 1 RNAi stocks for FBgn0035669 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 10 of 4 1.40None
Head1 ± 00 of 4 1.00None
Eye0 ± 00 of 4 0.78None
Thoracicoabdominal ganglion2 ± 10 of 4 2.20None
Salivary gland7 ± 10 of 4 6.37Up
Crop1 ± 00 of 4 1.00None
Midgut2 ± 00 of 4 2.20None
Tubule2 ± 00 of 4 2.00Up
Hindgut3 ± 10 of 4 2.60None
Heart1 ± 00 of 4 1.02None
Fat body2 ± 20 of 4 2.50None
Ovary1 ± 00 of 4 1.60None
Testis1 ± 00 of 4 1.50None
Male accessory glands4 ± 20 of 4 4.00None
Virgin spermatheca3 ± 10 of 4 2.96None
Mated spermatheca4 ± 20 of 4 3.46None
Adult carcass12 ± 40 of 411.00None
Larval CNS0 ± 00 of 4 0.61None
Larval Salivary gland7 ± 00 of 4 6.67Up
Larval midgut1 ± 00 of 4 1.52None
Larval tubule2 ± 00 of 4 1.70None
Larval hindgut1 ± 00 of 4 1.65None
Larval fat body3 ± 10 of 4 3.40None
Larval trachea1 ± 10 of 4 1.26None
Larval carcass1 ± 00 of 4 1.15None
S2 cells (growing)2 ± 10 of 4 2.26None
Whole fly1 ± 00 of 4

Looking for CG6592-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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