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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6603-RA through 18771 annotations produced 1 hits



Hsc70Cb (Hsc70Cb):

Annotation Number : CG6603
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026418
Gbrowse : chr3L:14030123-14036659 (+) // 100.0 //
Probeset : 1636741_s_at
Accessions : protein= NP_648687; /// NP_729951; /// NP_729952;, nucleotide= NM_140430; /// NM_168573; /// NM_168574;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electro
FlyMine data for FBgn0026418.
BDGP gene expression has embryonic in situ data for Hsc70Cb: 7 pix of staining in 5 body parts.
TRiP has 1 RNAi stocks for FBgn0026418 available for purchase.
VDRC has 1 RNAi stocks for FBgn0026418 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain187 ± 44 of 4 0.50Down
Head225 ± 94 of 4 0.60Down
Eye211 ± 134 of 4 0.58Down
Thoracicoabdominal ganglion196 ± 34 of 4 0.50Down
Salivary gland288 ± 114 of 4 0.79Down
Crop312 ± 14 of 4 0.90Down
Midgut261 ± 44 of 4 0.70Down
Tubule328 ± 104 of 4 0.90Down
Hindgut261 ± 84 of 4 0.70Down
Heart388 ± 144 of 4 1.07None
Fat body449 ± 144 of 4 1.24Up
Ovary637 ± 64 of 4 1.80Up
Testis251 ± 184 of 4 0.70Down
Male accessory glands296 ± 144 of 4 0.80Down
Virgin spermatheca393 ± 104 of 4 1.08None
Mated spermatheca393 ± 184 of 4 1.08None
Adult carcass297 ± 44 of 4 0.80Down
Larval CNS474 ± 294 of 4 1.30Up
Larval Salivary gland424 ± 124 of 4 1.17Up
Larval midgut324 ± 174 of 4 0.89None
Larval tubule341 ± 144 of 4 0.90None
Larval hindgut393 ± 314 of 4 1.08None
Larval fat body227 ± 124 of 4 0.60Down
Larval trachea278 ± 514 of 4 0.76Down
Larval carcass403 ± 134 of 4 1.11None
S2 cells (growing)453 ± 74 of 4 1.25Up
Whole fly363 ± 54 of 4

Looking for CG6603-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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