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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6610-RA through 18771 annotations produced 1 hits



(CG6610):

Annotation Number : CG6610
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035675
Gbrowse : chr3L:6068658-6069199 (+) // 100.0 //
Probeset : 1631853_at
Accessions : protein= NP_648022;, nucleotide= NM_139765;
Pathway : via spliceosome // inferred from sequence or structural similarity"
Interpro : 0005681 // spliceosomal complex // inferred from sequence or structural similarity /// 0005688 // U6 snRNP // non-tracea
FlyMine data for FBgn0035675.
BDGP gene expression has embryonic in situ data for CG6610: 4 pix of staining in 1 body parts.
BioGrid reports that CG6610 interacts with CG9344 .
TRiP has 1 RNAi stocks for FBgn0035675 available for purchase.
VDRC has 1 RNAi stocks for FBgn0035675 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain72 14 of 4 0.40Down
Head105 64 of 4 0.60Down
Eye46 54 of 4 0.26Down
Thoracicoabdominal ganglion69 54 of 4 0.40Down
Salivary gland110 54 of 4 0.62Down
Crop113 64 of 4 0.60Down
Midgut91 24 of 4 0.50Down
Tubule49 04 of 4 0.30Down
Hindgut94 04 of 4 0.50Down
Heart69 114 of 4 0.38Down
Fat body117 144 of 4 0.65Down
Ovary300 64 of 4 1.70Up
Testis80 54 of 4 0.40Down
Male accessory glands202 104 of 4 1.10None
Virgin spermatheca100 24 of 4 0.56Down
Mated spermatheca103 54 of 4 0.57Down
Adult carcass80 94 of 4 0.40Down
Larval CNS325 624 of 4 1.81Up
Larval Salivary gland208 164 of 4 1.16None
Larval midgut108 44 of 4 0.60Down
Larval tubule105 84 of 4 0.60Down
Larval hindgut147 74 of 4 0.82Down
Larval fat body81 84 of 4 0.50Down
Larval trachea130 384 of 4 0.72None
Larval carcass136 54 of 4 0.76Down
S2 cells (growing)130 24 of 4 0.73Down
Whole fly179 64 of 4

Looking for CG6610-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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