FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG6623-RA through 18771 annotations produced 1 hits

Shal Interactor of Di-Leucine Motif (SIDL):

Annotation Number : CG6623
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038303
Gbrowse : chr3R:11040481-11044596 (-) // 100.0 //
Probeset : 1632765_at
Accessions : protein= NP_650431;, nucleotide= NM_142174;
Pathway : 0005794 // Golgi apparatus // inferred from electronic annotation
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0038303.
BDGP gene expression has embryonic in situ data for CG6623: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0038303 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	132 ± 7	4 of 4	1.30	Up
Head	83 ± 2	4 of 4	0.80	Down
Eye	78 ± 3	4 of 4	0.79	Down
Thoracicoabdominal ganglion	151 ± 6	4 of 4	1.50	Up
Salivary gland	114 ± 8	3 of 4	1.15	None
Crop	105 ± 2	4 of 4	1.10	None
Midgut	72 ± 4	4 of 4	0.70	Down
Tubule	110 ± 4	4 of 4	1.10	Up
Hindgut	96 ± 3	4 of 4	1.00	None
Heart	69 ± 5	4 of 4	0.70	Down
Fat body	51 ± 4	4 of 4	0.52	Down
Ovary	157 ± 4	4 of 4	1.60	Up
Testis	36 ± 1	4 of 4	0.40	Down
Male accessory glands	65 ± 4	4 of 4	0.70	Down
Virgin spermatheca	84 ± 5	4 of 4	0.85	None
Mated spermatheca	96 ± 5	4 of 4	0.97	None
Adult carcass	70 ± 2	4 of 4	0.70	Down
Larval CNS	111 ± 8	4 of 4	1.12	None
Larval Salivary gland	68 ± 1	4 of 4	0.69	Down
Larval midgut	97 ± 6	4 of 4	0.98	None
Larval tubule	180 ± 4	4 of 4	1.80	Up
Larval hindgut	94 ± 5	4 of 4	0.95	None
Larval fat body	75 ± 6	4 of 4	0.80	Down
Larval trachea	68 ± 5	4 of 4	0.69	Down
Larval carcass	62 ± 4	4 of 4	0.63	Down
S2 cells (growing)	105 ± 5	4 of 4	1.07	None
Whole fly	99 ± 2	4 of 4

Looking for CG6623-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720