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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6623-RA through 18771 annotations produced 1 hits



Shal Interactor of Di-Leucine Motif (SIDL):

Annotation Number : CG6623
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038303
Gbrowse : chr3R:11040481-11044596 (-) // 100.0 //
Probeset : 1632765_at
Accessions : protein= NP_650431;, nucleotide= NM_142174;
Pathway : 0005794 // Golgi apparatus // inferred from electronic annotation
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0038303.
BDGP gene expression has embryonic in situ data for CG6623: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0038303 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain132 74 of 4 1.30Up
Head83 24 of 4 0.80Down
Eye78 34 of 4 0.79Down
Thoracicoabdominal ganglion151 64 of 4 1.50Up
Salivary gland114 83 of 4 1.15None
Crop105 24 of 4 1.10None
Midgut72 44 of 4 0.70Down
Tubule110 44 of 4 1.10Up
Hindgut96 34 of 4 1.00None
Heart69 54 of 4 0.70Down
Fat body51 44 of 4 0.52Down
Ovary157 44 of 4 1.60Up
Testis36 14 of 4 0.40Down
Male accessory glands65 44 of 4 0.70Down
Virgin spermatheca84 54 of 4 0.85None
Mated spermatheca96 54 of 4 0.97None
Adult carcass70 24 of 4 0.70Down
Larval CNS111 84 of 4 1.12None
Larval Salivary gland68 14 of 4 0.69Down
Larval midgut97 64 of 4 0.98None
Larval tubule180 44 of 4 1.80Up
Larval hindgut94 54 of 4 0.95None
Larval fat body75 64 of 4 0.80Down
Larval trachea68 54 of 4 0.69Down
Larval carcass62 44 of 4 0.63Down
S2 cells (growing)105 54 of 4 1.07None
Whole fly99 24 of 4

Looking for CG6623-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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