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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6639-RA through 18771 annotations produced 1 hits



/// Regulator of G-protein signalling 7 (CG6639 /// RSG7):

Annotation Number : CG6639
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032638
Gbrowse : chr2L:17454253-17455917 (-) // 100.0 //
Probeset : 1625698_at
Accessions : protein= NP_523380; /// NP_609840;, nucleotide= NM_078656; /// NM_135996;
Pathway : 0005834 // heterotrimeric G-protein complex // inferred from electronic annotation
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0032638.
Homophila reports that CG6639 is a close match (2e-12) to human gene HP (NP_005134), a gene associated with [Anhaptoglobinemia] (3);[Hypohaptoglobinemia] (3).
VDRC has 3 RNAi stocks for FBgn0032638 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.60None
Head7 ± 10 of 4 1.90None
Eye7 ± 21 of 4 2.07None
Thoracicoabdominal ganglion2 ± 00 of 4 0.60None
Salivary gland5 ± 20 of 4 1.45None
Crop4 ± 00 of 4 1.10None
Midgut4 ± 10 of 4 1.20None
Tubule3 ± 00 of 4 0.90None
Hindgut6 ± 10 of 4 1.60None
Heart2 ± 10 of 4 0.63None
Fat body6 ± 61 of 4 1.67None
Ovary0 ± 00 of 4 0.20None
Testis1 ± 00 of 4 0.40None
Male accessory glands5 ± 10 of 4 1.40None
Virgin spermatheca247 ± 1634 of 465.89None
Mated spermatheca37 ± 242 of 4 9.85None
Adult carcass9 ± 30 of 4 2.60None
Larval CNS1 ± 10 of 4 0.50None
Larval Salivary gland10 ± 32 of 4 2.68None
Larval midgut1 ± 00 of 4 0.39None
Larval tubule3 ± 10 of 4 0.80None
Larval hindgut58 ± 134 of 415.69Up
Larval fat body1274 ± 1034 of 4339.80Up
Larval trachea16 ± 192 of 4 4.51None
Larval carcass11 ± 12 of 4 3.07Up
S2 cells (growing)5 ± 11 of 4 1.59None
Whole fly3 ± 21 of 4

Looking for CG6639-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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