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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6646-RA through 18771 annotations produced 1 hits



DJ-1alpha (DJ-1alpha):

Annotation Number : CG6646
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033885
Gbrowse : chr2R:9830038-9830882 (-) // 100.0 //
Probeset : 1633817_at
Accessions : protein= NP_610916;, nucleotide= NM_137072;
FlyMine data for FBgn0033885.
Homophila reports that CG6646 is a close match (5e-45) to human gene DJ1;PARK7 (NP_009193), a gene associated with Amyotrophic lateral sclerosis-Parkinsonism/dementia complex 2 (3);Parkinson disease 7, autosomal recessive early-onset, 606324 (3).
TRiP has 3 RNAi stocks for FBgn0033885 available for purchase.
VDRC has 1 RNAi stocks for FBgn0033885 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain64 ± 44 of 4 2.80Up
Head10 ± 30 of 4 0.50Down
Eye16 ± 22 of 4 0.73None
Thoracicoabdominal ganglion35 ± 44 of 4 1.60Up
Salivary gland17 ± 20 of 4 0.78None
Crop7 ± 10 of 4 0.30Down
Midgut7 ± 20 of 4 0.30Down
Tubule3 ± 10 of 4 0.20Down
Hindgut3 ± 00 of 4 0.10Down
Heart6 ± 10 of 4 0.28Down
Fat body5 ± 30 of 4 0.25Down
Ovary1 ± 00 of 4 0.10Down
Testis256 ± 94 of 411.20Up
Male accessory glands8 ± 30 of 4 0.40Down
Virgin spermatheca5 ± 20 of 4 0.24Down
Mated spermatheca6 ± 20 of 4 0.30Down
Adult carcass5 ± 10 of 4 0.20Down
Larval CNS22 ± 13 of 4 0.97None
Larval Salivary gland18 ± 20 of 4 0.81None
Larval midgut12 ± 30 of 4 0.54Down
Larval tubule3 ± 10 of 4 0.10Down
Larval hindgut3 ± 20 of 4 0.16Down
Larval fat body35 ± 112 of 4 1.50None
Larval trachea12 ± 70 of 4 0.53Down
Larval carcass5 ± 10 of 4 0.26Down
S2 cells (growing)7 ± 30 of 4 0.31Down
Whole fly23 ± 23 of 4

Looking for CG6646-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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