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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG6652-RA through 18771 annotations produced 1 hits


Annotation Number : CG6652
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036687
Gbrowse : chr3L:17013439-17015956 (-) // 100.0 //
Probeset : 1624197_a_at
Accessions : protein= NP_648946; /// NP_730235;, nucleotide= NM_140689; /// NM_168712;
Pathway : engulfment // inferred from mutant phenotype"
FlyMine data for FBgn0036687.
Homophila reports that CG6652 is a close match (3e-14) to human gene C6orf152;LCA5 (NP_859065), a gene associated with Leber congenital amaurosis, type V, 604537 (3).
VDRC has 2 RNAi stocks for FBgn0036687 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 01 of 4 0.00Down
Head7 01 of 4 0.10Down
Eye3 10 of 4 0.02Down
Thoracicoabdominal ganglion3 11 of 4 0.00Down
Salivary gland13 40 of 4 0.10Down
Crop2 10 of 4 0.00Down
Midgut2 10 of 4 0.00Down
Tubule3 00 of 4 0.00Down
Hindgut1 00 of 4 0.00Down
Heart1 00 of 4 0.01Down
Fat body3 30 of 4 0.02Down
Ovary2 00 of 4 0.00Down
Testis1544 534 of 411.20Up
Male accessory glands3 10 of 4 0.00Down
Virgin spermatheca4 10 of 4 0.04Down
Mated spermatheca4 10 of 4 0.03Down
Adult carcass5 10 of 4 0.00Down
Larval CNS3 20 of 4 0.03Down
Larval Salivary gland5 10 of 4 0.04Down
Larval midgut1 00 of 4 0.01Down
Larval tubule3 20 of 4 0.00Down
Larval hindgut3 00 of 4 0.03Down
Larval fat body158 894 of 4 1.10None
Larval trachea7 82 of 4 0.05Down
Larval carcass1 00 of 4 0.01Down
S2 cells (growing)0 00 of 4 0.01Down
Whole fly137 164 of 4

Looking for CG6652-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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