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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6654-RA through 18771 annotations produced 1 hits



(CG6654):

Annotation Number : CG6654
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038301
Gbrowse : chr3R:11036998-11039322 (-) // 100.0 //
Probeset : 1637862_at
Accessions : protein= NP_650429;, nucleotide= NM_142172;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0038301.
BDGP gene expression has embryonic in situ data for CG6654: 24 pix of staining in 4 body parts.
Homophila reports that CG6654 is a close match (1e-11) to human gene SIP1;SMADIP1;ZEB2;ZFHX1B (NP_055610), a gene associated with Mowat-Wilson syndrome, 235730 (3).
BioGrid reports that CG6654 interacts with CG6964 CG6998 CG7430 CG7483 CG8159 CG9793 .
VDRC has 1 RNAi stocks for FBgn0038301 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain221 134 of 4 3.70Up
Head59 24 of 4 1.00None
Eye46 24 of 4 0.79None
Thoracicoabdominal ganglion187 84 of 4 3.10Up
Salivary gland57 43 of 4 0.97None
Crop41 33 of 4 0.70Down
Midgut38 14 of 4 0.70Down
Tubule51 14 of 4 0.90Down
Hindgut52 24 of 4 0.90None
Heart35 34 of 4 0.60Down
Fat body42 24 of 4 0.72Down
Ovary114 34 of 4 1.90Up
Testis21 04 of 4 0.40Down
Male accessory glands54 34 of 4 0.90None
Virgin spermatheca38 44 of 4 0.64Down
Mated spermatheca36 23 of 4 0.61Down
Adult carcass50 24 of 4 0.90None
Larval CNS84 44 of 4 1.42Up
Larval Salivary gland47 34 of 4 0.79None
Larval midgut41 33 of 4 0.69Down
Larval tubule61 34 of 4 1.00None
Larval hindgut51 24 of 4 0.86None
Larval fat body44 34 of 4 0.80Down
Larval trachea69 44 of 4 1.16None
Larval carcass48 34 of 4 0.82None
S2 cells (growing)82 34 of 4 1.38Up
Whole fly59 44 of 4

Looking for CG6654-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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