FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG6654-RA through 18771 annotations produced 1 hits

(CG6654):

Annotation Number : CG6654
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038301
Gbrowse : chr3R:11036998-11039322 (-) // 100.0 //
Probeset : 1637862_at
Accessions : protein= NP_650429;, nucleotide= NM_142172;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0038301.
BDGP gene expression has embryonic in situ data for CG6654: 24 pix of staining in 4 body parts.
Homophila reports that CG6654 is a close match (1e-11) to human gene SIP1;SMADIP1;ZEB2;ZFHX1B (NP_055610), a gene associated with Mowat-Wilson syndrome, 235730 (3).
BioGrid reports that CG6654 interacts with CG6964 CG6998 CG7430 CG7483 CG8159 CG9793 .
VDRC has 1 RNAi stocks for FBgn0038301 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	221 ± 13	4 of 4	3.70	Up
Head	59 ± 2	4 of 4	1.00	None
Eye	46 ± 2	4 of 4	0.79	None
Thoracicoabdominal ganglion	187 ± 8	4 of 4	3.10	Up
Salivary gland	57 ± 4	3 of 4	0.97	None
Crop	41 ± 3	3 of 4	0.70	Down
Midgut	38 ± 1	4 of 4	0.70	Down
Tubule	51 ± 1	4 of 4	0.90	Down
Hindgut	52 ± 2	4 of 4	0.90	None
Heart	35 ± 3	4 of 4	0.60	Down
Fat body	42 ± 2	4 of 4	0.72	Down
Ovary	114 ± 3	4 of 4	1.90	Up
Testis	21 ± 0	4 of 4	0.40	Down
Male accessory glands	54 ± 3	4 of 4	0.90	None
Virgin spermatheca	38 ± 4	4 of 4	0.64	Down
Mated spermatheca	36 ± 2	3 of 4	0.61	Down
Adult carcass	50 ± 2	4 of 4	0.90	None
Larval CNS	84 ± 4	4 of 4	1.42	Up
Larval Salivary gland	47 ± 3	4 of 4	0.79	None
Larval midgut	41 ± 3	3 of 4	0.69	Down
Larval tubule	61 ± 3	4 of 4	1.00	None
Larval hindgut	51 ± 2	4 of 4	0.86	None
Larval fat body	44 ± 3	4 of 4	0.80	Down
Larval trachea	69 ± 4	4 of 4	1.16	None
Larval carcass	48 ± 3	4 of 4	0.82	None
S2 cells (growing)	82 ± 3	4 of 4	1.38	Up
Whole fly	59 ± 4	4 of 4

Looking for CG6654-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720