FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG6669-RA through 18771 annotations produced 1 hits

klingon (klg):

Annotation Number : CG6669
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0017590
Gbrowse : chr3R:18725023-18787456 (+) // 100.0 //
Probeset : 1635144_at
Accessions : protein= NP_524454;, nucleotide= NM_079730;
Pathway : 0019897 // extrinsic to plasma membrane // inferred from sequence or structural similarity
FlyMine data for FBgn0017590.
Homophila reports that CG6669 is a close match (6e-11) to human gene FGFR4 (NP_075252), a gene associated with {Cancer progression/metastasis} (3).
TRiP has 1 RNAi stocks for FBgn0017590 available for purchase.
VDRC has 4 RNAi stocks for FBgn0017590 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	474 ± 10	4 of 4	29.30	Up
Head	99 ± 6	4 of 4	6.10	Up
Eye	109 ± 8	4 of 4	6.78	Up
Thoracicoabdominal ganglion	339 ± 13	4 of 4	20.90	Up
Salivary gland	8 ± 1	0 of 4	0.54	Down
Crop	4 ± 1	1 of 4	0.30	Down
Midgut	5 ± 1	0 of 4	0.40	Down
Tubule	4 ± 0	0 of 4	0.30	Down
Hindgut	4 ± 1	2 of 4	0.30	Down
Heart	4 ± 0	1 of 4	0.26	Down
Fat body	7 ± 1	2 of 4	0.48	Down
Ovary	1 ± 0	0 of 4	0.10	Down
Testis	2 ± 0	0 of 4	0.10	Down
Male accessory glands	9 ± 1	0 of 4	0.60	Down
Virgin spermatheca	4 ± 1	0 of 4	0.25	Down
Mated spermatheca	6 ± 0	0 of 4	0.38	Down
Adult carcass	12 ± 1	1 of 4	0.80	None
Larval CNS	288 ± 21	4 of 4	17.81	Up
Larval Salivary gland	4 ± 2	0 of 4	0.26	Down
Larval midgut	4 ± 1	0 of 4	0.26	Down
Larval tubule	5 ± 1	2 of 4	0.30	Down
Larval hindgut	4 ± 1	1 of 4	0.24	Down
Larval fat body	4 ± 1	0 of 4	0.30	Down
Larval trachea	11 ± 3	4 of 4	0.71	None
Larval carcass	8 ± 1	3 of 4	0.50	Down
S2 cells (growing)	2 ± 0	0 of 4	0.17	Down
Whole fly	16 ± 1	4 of 4

Looking for CG6669-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720