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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG6669-RA through 18771 annotations produced 1 hits

klingon (klg):

Annotation Number : CG6669
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0017590
Gbrowse : chr3R:18725023-18787456 (+) // 100.0 //
Probeset : 1635144_at
Accessions : protein= NP_524454;, nucleotide= NM_079730;
Pathway : 0019897 // extrinsic to plasma membrane // inferred from sequence or structural similarity
FlyMine data for FBgn0017590.
Homophila reports that CG6669 is a close match (6e-11) to human gene FGFR4 (NP_075252), a gene associated with {Cancer progression/metastasis} (3).
TRiP has 1 RNAi stocks for FBgn0017590 available for purchase.
VDRC has 4 RNAi stocks for FBgn0017590 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain474 104 of 429.30Up
Head99 64 of 4 6.10Up
Eye109 84 of 4 6.78Up
Thoracicoabdominal ganglion339 134 of 420.90Up
Salivary gland8 10 of 4 0.54Down
Crop4 11 of 4 0.30Down
Midgut5 10 of 4 0.40Down
Tubule4 00 of 4 0.30Down
Hindgut4 12 of 4 0.30Down
Heart4 01 of 4 0.26Down
Fat body7 12 of 4 0.48Down
Ovary1 00 of 4 0.10Down
Testis2 00 of 4 0.10Down
Male accessory glands9 10 of 4 0.60Down
Virgin spermatheca4 10 of 4 0.25Down
Mated spermatheca6 00 of 4 0.38Down
Adult carcass12 11 of 4 0.80None
Larval CNS288 214 of 417.81Up
Larval Salivary gland4 20 of 4 0.26Down
Larval midgut4 10 of 4 0.26Down
Larval tubule5 12 of 4 0.30Down
Larval hindgut4 11 of 4 0.24Down
Larval fat body4 10 of 4 0.30Down
Larval trachea11 34 of 4 0.71None
Larval carcass8 13 of 4 0.50Down
S2 cells (growing)2 00 of 4 0.17Down
Whole fly16 14 of 4

Looking for CG6669-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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