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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6672-RA through 18771 annotations produced 1 hits



(CG6672):

Annotation Number : CG6672
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037875
Gbrowse : chr3R:7037961-7040239 (-) // 100.0 //
Probeset : 1627888_at
Accessions : protein= NP_650049;, nucleotide= NM_141792;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0005385 // zinc ion transmembrane transporter activity // inferred from sequence or structural similarity /// 0008324 //
FlyMine data for FBgn0037875.
VDRC has 2 RNAi stocks for FBgn0037875 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain69 ± 14 of 4 0.50Down
Head103 ± 34 of 4 0.70Down
Eye71 ± 24 of 4 0.47Down
Thoracicoabdominal ganglion83 ± 34 of 4 0.50Down
Salivary gland607 ± 494 of 4 3.95Up
Crop153 ± 64 of 4 1.00None
Midgut255 ± 74 of 4 1.70Up
Tubule552 ± 234 of 4 3.60Up
Hindgut128 ± 134 of 4 0.80None
Heart107 ± 74 of 4 0.70Down
Fat body279 ± 254 of 4 1.81Up
Ovary364 ± 94 of 4 2.40Up
Testis83 ± 44 of 4 0.50Down
Male accessory glands787 ± 474 of 4 5.10Up
Virgin spermatheca459 ± 154 of 4 2.98Up
Mated spermatheca625 ± 344 of 4 4.07Up
Adult carcass130 ± 44 of 4 0.80None
Larval CNS161 ± 104 of 4 1.05None
Larval Salivary gland377 ± 374 of 4 2.45Up
Larval midgut331 ± 154 of 4 2.15Up
Larval tubule321 ± 34 of 4 2.10Up
Larval hindgut247 ± 154 of 4 1.60Up
Larval fat body318 ± 294 of 4 2.10Up
Larval trachea291 ± 254 of 4 1.89Up
Larval carcass436 ± 424 of 4 2.84Up
S2 cells (growing)467 ± 144 of 4 3.04Up
Whole fly154 ± 84 of 4

Looking for CG6672-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime