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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6673-RB through 18771 annotations produced 1 hits



(CG6673):

Annotation Number : CG6673
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035906
Gbrowse : chr3L:8515512-8516600 (-) // 100.0 //
Probeset : 1627845_at
Accessions : protein= NP_648236; /// NP_729388;, nucleotide= NM_139979; /// NM_168277;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : "0004364 // glutathione transferase activity // inferred from sequence or structural similarity /// 0004364 // glutathio
FlyMine data for FBgn0035906.
BDGP gene expression has embryonic in situ data for CG6673: 17 pix of staining in 9 body parts.
VDRC has 3 RNAi stocks for FBgn0035906 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain307 ± 44 of 4 0.60Down
Head660 ± 174 of 4 1.40Up
Eye1268 ± 344 of 4 2.65Up
Thoracicoabdominal ganglion390 ± 184 of 4 0.80Down
Salivary gland670 ± 54 of 4 1.40Up
Crop1411 ± 314 of 4 2.90Up
Midgut1276 ± 444 of 4 2.70Up
Tubule1135 ± 604 of 4 2.40Up
Hindgut693 ± 44 of 4 1.40Up
Heart939 ± 664 of 4 1.96Up
Fat body397 ± 464 of 4 0.83None
Ovary579 ± 44 of 4 1.20Up
Testis458 ± 134 of 4 1.00None
Male accessory glands744 ± 104 of 4 1.60Up
Virgin spermatheca740 ± 284 of 4 1.54Up
Mated spermatheca710 ± 264 of 4 1.48Up
Adult carcass507 ± 64 of 4 1.10None
Larval CNS515 ± 294 of 4 1.08None
Larval Salivary gland942 ± 194 of 4 1.97Up
Larval midgut397 ± 184 of 4 0.83None
Larval tubule565 ± 104 of 4 1.20Up
Larval hindgut607 ± 144 of 4 1.27Up
Larval fat body301 ± 104 of 4 0.60Down
Larval trachea955 ± 294 of 4 1.99Up
Larval carcass641 ± 494 of 4 1.34Up
S2 cells (growing)599 ± 244 of 4 1.25Up
Whole fly479 ± 274 of 4

Looking for CG6673-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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