FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG6685-RA through 18771 annotations produced 1 hits

(CG6685):

Annotation Number : CG6685
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036062
Gbrowse : chr3L:9960303-9961401 (-) // 99.57 //
Probeset : 1624291_at
Accessions : protein= NP_648376;, nucleotide= NM_140119;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036062.
BioGrid reports that CG6685 interacts with CG8884 .
VDRC has 1 RNAi stocks for FBgn0036062 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	53 ± 0	4 of 4	0.70	Down
Head	29 ± 2	4 of 4	0.40	Down
Eye	19 ± 1	4 of 4	0.24	Down
Thoracicoabdominal ganglion	42 ± 3	4 of 4	0.50	Down
Salivary gland	32 ± 2	0 of 4	0.42	Down
Crop	26 ± 1	4 of 4	0.30	Down
Midgut	25 ± 2	3 of 4	0.30	Down
Tubule	22 ± 2	3 of 4	0.30	Down
Hindgut	27 ± 1	4 of 4	0.30	Down
Heart	21 ± 2	4 of 4	0.27	Down
Fat body	21 ± 5	1 of 4	0.28	Down
Ovary	208 ± 7	4 of 4	2.70	Up
Testis	84 ± 3	4 of 4	1.10	None
Male accessory glands	23 ± 3	3 of 4	0.30	Down
Virgin spermatheca	24 ± 2	3 of 4	0.31	Down
Mated spermatheca	26 ± 2	3 of 4	0.34	Down
Adult carcass	27 ± 3	1 of 4	0.40	Down
Larval CNS	77 ± 4	4 of 4	0.98	None
Larval Salivary gland	28 ± 3	3 of 4	0.37	Down
Larval midgut	52 ± 4	4 of 4	0.66	Down
Larval tubule	46 ± 2	4 of 4	0.60	Down
Larval hindgut	33 ± 1	4 of 4	0.42	Down
Larval fat body	43 ± 4	4 of 4	0.50	Down
Larval trachea	35 ± 3	4 of 4	0.45	Down
Larval carcass	23 ± 6	2 of 4	0.30	Down
S2 cells (growing)	18 ± 1	3 of 4	0.24	Down
Whole fly	78 ± 4	4 of 4

Looking for CG6685-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720