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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6689-RA through 18771 annotations produced 1 hits



(CG6689):

Annotation Number : CG6689
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037877
Gbrowse : chr3R:7043619-7045766 (-) // 100.0 //
Probeset : 1628667_at
Accessions : protein= NP_650051;, nucleotide= NM_141794;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0037877.
Homophila reports that CG6689 is a close match (8e-11) to human gene SIP1;SMADIP1;ZEB2;ZFHX1B (NP_055610), a gene associated with Mowat-Wilson syndrome, 235730 (3).
VDRC has 3 RNAi stocks for FBgn0037877 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain137 14 of 4 1.80Up
Head108 24 of 4 1.40Up
Eye134 44 of 4 1.79Up
Thoracicoabdominal ganglion124 34 of 4 1.70Up
Salivary gland88 144 of 4 1.18None
Crop181 34 of 4 2.40Up
Midgut55 34 of 4 0.70Down
Tubule63 14 of 4 0.80Down
Hindgut112 24 of 4 1.50Up
Heart73 54 of 4 0.98None
Fat body50 51 of 4 0.67Down
Ovary71 24 of 4 1.00None
Testis17 13 of 4 0.20Down
Male accessory glands76 24 of 4 1.00None
Virgin spermatheca63 43 of 4 0.85None
Mated spermatheca60 44 of 4 0.81None
Adult carcass113 34 of 4 1.50Up
Larval CNS74 94 of 4 1.00None
Larval Salivary gland47 20 of 4 0.63Down
Larval midgut32 21 of 4 0.43Down
Larval tubule55 14 of 4 0.70Down
Larval hindgut73 54 of 4 0.98None
Larval fat body24 12 of 4 0.30Down
Larval trachea77 224 of 4 1.03None
Larval carcass82 34 of 4 1.11None
S2 cells (growing)82 24 of 4 1.11None
Whole fly75 44 of 4

Looking for CG6689-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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