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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG6690-RA through 18771 annotations produced 1 hits


(CG6690):

Annotation Number : CG6690
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038918
Gbrowse : chr3R:17737537-17739226 (+) // 100.0 //
Probeset : 1631800_at
Accessions : protein= NP_650997;, nucleotide= NM_142740;
Interpro : 0016971 // flavin-linked sulfhydryl oxidase activity // inferred from sequence or structural similarity /// 0016972 // t
FlyMine data for FBgn0038918.
TRiP has 1 RNAi stocks for FBgn0038918 available for purchase.
VDRC has 2 RNAi stocks for FBgn0038918 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head1 ± 10 of 4 0.00Down
Eye3 ± 10 of 4 0.09Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.10Down
Salivary gland9 ± 10 of 4 0.24Down
Crop2 ± 10 of 4 0.10Down
Midgut1 ± 00 of 4 0.00Down
Tubule3 ± 00 of 4 0.10Down
Hindgut4 ± 10 of 4 0.10Down
Heart1 ± 00 of 4 0.03Down
Fat body3 ± 20 of 4 0.09Down
Ovary0 ± 00 of 4 0.00Down
Testis2 ± 11 of 4 0.10Down
Male accessory glands3367 ± 764 of 485.60Up
Virgin spermatheca2 ± 00 of 4 0.06Down
Mated spermatheca2 ± 10 of 4 0.07Down
Adult carcass6 ± 10 of 4 0.20Down
Larval CNS2 ± 00 of 4 0.06Down
Larval Salivary gland2 ± 10 of 4 0.07Down
Larval midgut1 ± 00 of 4 0.03Down
Larval tubule2 ± 00 of 4 0.10Down
Larval hindgut2 ± 00 of 4 0.06Down
Larval fat body0 ± 00 of 4 0.00Down
Larval trachea2 ± 10 of 4 0.06Down
Larval carcass3 ± 00 of 4 0.09Down
S2 cells (growing)1 ± 00 of 4 0.04Down
Whole fly39 ± 64 of 4

Looking for CG6690-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime