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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6698-RA through 18771 annotations produced 1 hits



NtR (NtR):

Annotation Number : CG6698
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029147
Gbrowse : chr2R:18015312-18017693 (+) // 100.0 //
Probeset : 1625140_at
Accessions : protein= NP_651958;, nucleotide= NM_143701;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005230 // extracellular ligand-gated ion channel activity // inferred from electronic annotation /// 0005231 // excitat
FlyMine data for FBgn0029147.
BDGP gene expression has embryonic in situ data for NtR: 39 pix of staining in 5 body parts.
TRiP has 1 RNAi stocks for FBgn0029147 available for purchase.
VDRC has 3 RNAi stocks for FBgn0029147 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain103 94 of 4 1.60Up
Head329 144 of 4 5.10Up
Eye72 114 of 4 1.11None
Thoracicoabdominal ganglion60 74 of 4 0.90None
Salivary gland27 33 of 4 0.42Down
Crop20 24 of 4 0.30Down
Midgut15 14 of 4 0.20Down
Tubule16 23 of 4 0.30Down
Hindgut19 14 of 4 0.30Down
Heart1488 484 of 422.85Up
Fat body70 234 of 4 1.07None
Ovary4 10 of 4 0.10Down
Testis54 24 of 4 0.80None
Male accessory glands10 30 of 4 0.20Down
Virgin spermatheca47 74 of 4 0.73None
Mated spermatheca43 44 of 4 0.67Down
Adult carcass379 364 of 4 5.80Up
Larval CNS9 14 of 4 0.14Down
Larval Salivary gland11 31 of 4 0.18Down
Larval midgut29 84 of 4 0.45Down
Larval tubule55 84 of 4 0.90None
Larval hindgut27 44 of 4 0.43Down
Larval fat body87 134 of 4 1.30None
Larval trachea93 144 of 4 1.43Up
Larval carcass227 84 of 4 3.50Up
S2 cells (growing)482 154 of 4 7.40Up
Whole fly65 64 of 4

Looking for CG6698-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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