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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6705-RA through 18771 annotations produced 1 hits



Torsolike (tsl):

Annotation Number : CG6705
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003867
Gbrowse : chr3R:17603835-17608256 (-) // 100.0 //
Probeset : 1641143_s_at
Accessions : protein= NP_524440; /// NP_732660;, nucleotide= NM_079716; /// NM_169969;
Pathway : embryo // traceable author statement /// 0009880 // embryonic pattern specification // inferred from expression pattern
Interpro : 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // inferred from elect
FlyMine data for FBgn0003867.
BDGP gene expression has embryonic in situ data for tsl: 36 pix of staining in 9 body parts.
BioGrid reports that CG6705 interacts with CG1034 CG1034 CG1034 CG1034 CG1034 CG9786 CG1389 CG5619 CG5619 CG4790 CG4790 CG11411 .
VDRC has 2 RNAi stocks for FBgn0003867 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain27 ± 34 of 4 0.20Down
Head633 ± 274 of 4 4.80Up
Eye931 ± 1134 of 4 7.05Up
Thoracicoabdominal ganglion29 ± 34 of 4 0.20Down
Salivary gland283 ± 164 of 4 2.14Up
Crop536 ± 144 of 4 4.10Up
Midgut17 ± 30 of 4 0.10Down
Tubule14 ± 32 of 4 0.10Down
Hindgut645 ± 204 of 4 4.90Up
Heart629 ± 454 of 4 4.77Up
Fat body1001 ± 804 of 4 7.58Up
Ovary16 ± 04 of 4 0.10Down
Testis9 ± 13 of 4 0.10Down
Male accessory glands9 ± 20 of 4 0.10Down
Virgin spermatheca668 ± 414 of 4 5.06Up
Mated spermatheca567 ± 404 of 4 4.30Up
Adult carcass544 ± 384 of 4 4.10Up
Larval CNS26 ± 54 of 4 0.20Down
Larval Salivary gland29 ± 34 of 4 0.22Down
Larval midgut8 ± 10 of 4 0.06Down
Larval tubule5 ± 10 of 4 0.00Down
Larval hindgut114 ± 54 of 4 0.87None
Larval fat body360 ± 414 of 4 2.70Up
Larval trachea520 ± 284 of 4 3.94Up
Larval carcass171 ± 114 of 4 1.30Up
S2 cells (growing)0 ± 00 of 4 0.01Down
Whole fly132 ± 44 of 4

Looking for CG6705-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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