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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6707-RA through 18771 annotations produced 1 hits



(CG6707):

Annotation Number : CG6707
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036058
Gbrowse : chr3L:9887914-9891693 (-) // 100.0 //
Probeset : 1628980_s_at
Accessions : protein= NP_648372; /// NP_729575; /// NP_729576;, nucleotide= NM_140115; /// NM_168388; /// NM_168389;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036058.
BioGrid reports that CG6707 interacts with CG8942 CG6819 CG7570 CG8159 CG8449 CG9173 CG9640 CG9916 .
TRiP has 1 RNAi stocks for FBgn0036058 available for purchase.
VDRC has 3 RNAi stocks for FBgn0036058 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain434 ± 164 of 4 1.90Up
Head332 ± 64 of 4 1.40Up
Eye448 ± 204 of 4 1.93Up
Thoracicoabdominal ganglion605 ± 284 of 4 2.60Up
Salivary gland277 ± 244 of 4 1.20None
Crop299 ± 164 of 4 1.30Up
Midgut258 ± 94 of 4 1.10None
Tubule433 ± 144 of 4 1.90Up
Hindgut304 ± 104 of 4 1.30Up
Heart390 ± 194 of 4 1.68Up
Fat body303 ± 504 of 4 1.31None
Ovary426 ± 184 of 4 1.80Up
Testis120 ± 54 of 4 0.50Down
Male accessory glands324 ± 184 of 4 1.40Up
Virgin spermatheca465 ± 284 of 4 2.01Up
Mated spermatheca491 ± 134 of 4 2.12Up
Adult carcass231 ± 84 of 4 1.00None
Larval CNS519 ± 214 of 4 2.24Up
Larval Salivary gland261 ± 184 of 4 1.13None
Larval midgut658 ± 344 of 4 2.84Up
Larval tubule661 ± 184 of 4 2.90Up
Larval hindgut468 ± 264 of 4 2.02Up
Larval fat body709 ± 744 of 4 3.10Up
Larval trachea393 ± 504 of 4 1.69Up
Larval carcass346 ± 404 of 4 1.49None
S2 cells (growing)691 ± 134 of 4 2.98Up
Whole fly232 ± 114 of 4

Looking for CG6707-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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