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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6712-RA through 18771 annotations produced 1 hits



(CG6712):

Annotation Number : CG6712
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032408
Gbrowse : chr2L:12095168-12096510 (-) // 100.0 //
Probeset : 1638350_at
Accessions : protein= NP_477479;, nucleotide= NM_058131;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from sequence or structur
Interpro : 0003723 // RNA binding // inferred from sequence or structural similarity /// 0003723 // RNA binding // inferred from el
FlyMine data for FBgn0032408.
BDGP gene expression has embryonic in situ data for CG6712: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0032408 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain64 ± 04 of 4 0.30Down
Head81 ± 54 of 4 0.40Down
Eye75 ± 34 of 4 0.40Down
Thoracicoabdominal ganglion84 ± 54 of 4 0.50Down
Salivary gland91 ± 34 of 4 0.49Down
Crop96 ± 24 of 4 0.50Down
Midgut102 ± 24 of 4 0.50Down
Tubule82 ± 114 of 4 0.40Down
Hindgut70 ± 54 of 4 0.40Down
Heart87 ± 24 of 4 0.47Down
Fat body114 ± 144 of 4 0.61Down
Ovary392 ± 44 of 4 2.10Up
Testis32 ± 24 of 4 0.20Down
Male accessory glands218 ± 154 of 4 1.20None
Virgin spermatheca102 ± 44 of 4 0.55Down
Mated spermatheca153 ± 34 of 4 0.82Down
Adult carcass79 ± 44 of 4 0.40Down
Larval CNS309 ± 94 of 4 1.66Up
Larval Salivary gland167 ± 104 of 4 0.90None
Larval midgut76 ± 34 of 4 0.41Down
Larval tubule43 ± 04 of 4 0.20Down
Larval hindgut122 ± 144 of 4 0.66Down
Larval fat body50 ± 54 of 4 0.30Down
Larval trachea247 ± 284 of 4 1.33Up
Larval carcass148 ± 304 of 4 0.79None
S2 cells (growing)176 ± 24 of 4 0.94None
Whole fly186 ± 64 of 4

Looking for CG6712-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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