Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6721-RB through 18771 annotations produced 2 hits



sextra (Gap1):

Annotation Number : CG6721
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004390
Gbrowse : chr3L:9832785-9848379 (-) // 100.0 //
Probeset : 1635325_a_at
Accessions : protein= NP_524014; /// NP_729562;, nucleotide= NM_079290; /// NM_168382;
Pathway : open tracheal system // inferred from mutant phenotype /// 0007476 // imaginal disc-derived wing morphogenesis // infer
Interpro : embryo // traceable author statement /// 0016321 // female meiosis chromosome segregation // inferred from mutant pheno
FlyMine data for FBgn0004390.
Homophila reports that CG6721 is a close match (4e-34) to human gene CMAVM;GAP;PKWS;RASA1 (NP_002881), a gene associated with Basal cell carcinoma, somatic (3);Capillary malformation-arteriovenous malformation, 608354 (3);Parkes Weber syndrome, 608355 (3).
BioGrid reports that CG6721 interacts with CG3166 CG8285 CG3954 CG2647 CG9375 CG9375 CG18085 CG4200 CG11502 CG10079 CG5123 CG4209 CG9842 CG31481 CG31481 CG1921 CG31774 CG4264 .
TRiP has 2 RNAi stocks for FBgn0004390 available for purchase.
VDRC has 3 RNAi stocks for FBgn0004390 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain22 ± 24 of 4 1.70Up
Head11 ± 12 of 4 0.90None
Eye2 ± 00 of 4 0.22Down
Thoracicoabdominal ganglion10 ± 13 of 4 0.80None
Salivary gland7 ± 10 of 4 0.59None
Crop7 ± 12 of 4 0.60None
Midgut8 ± 13 of 4 0.60None
Tubule12 ± 12 of 4 0.90None
Hindgut12 ± 14 of 4 0.90None
Heart4 ± 00 of 4 0.35Down
Fat body8 ± 21 of 4 0.67None
Ovary36 ± 14 of 4 2.80Up
Testis3 ± 00 of 4 0.20Down
Male accessory glands13 ± 22 of 4 1.00None
Virgin spermatheca6 ± 00 of 4 0.45Down
Mated spermatheca5 ± 11 of 4 0.39Down
Adult carcass6 ± 10 of 4 0.50Down
Larval CNS16 ± 34 of 4 1.26None
Larval Salivary gland6 ± 10 of 4 0.50Down
Larval midgut6 ± 02 of 4 0.51Down
Larval tubule8 ± 01 of 4 0.60None
Larval hindgut9 ± 11 of 4 0.68None
Larval fat body8 ± 21 of 4 0.60None
Larval trachea6 ± 41 of 4 0.46None
Larval carcass5 ± 10 of 4 0.40Down
S2 cells (growing)44 ± 54 of 4 3.30Up
Whole fly13 ± 22 of 4



sextra (Gap1):

Annotation Number : CG6721
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004390
Gbrowse : chr3L:9832194-9848379 (-) // 100.0 //
Probeset : 1629842_at
Accessions : protein= NP_524014; /// NP_729562;, nucleotide= NM_079290; /// NM_168382;
Pathway : open tracheal system // inferred from mutant phenotype /// 0007476 // imaginal disc-derived wing morphogenesis // infer
Interpro : embryo // traceable author statement /// 0016321 // female meiosis chromosome segregation // inferred from mutant pheno
FlyMine data for FBgn0004390.
Homophila reports that CG6721 is a close match (4e-34) to human gene CMAVM;GAP;PKWS;RASA1 (NP_002881), a gene associated with Basal cell carcinoma, somatic (3);Capillary malformation-arteriovenous malformation, 608354 (3);Parkes Weber syndrome, 608355 (3).
BioGrid reports that CG6721 interacts with CG3166 CG8285 CG3954 CG2647 CG9375 CG9375 CG18085 CG4200 CG11502 CG10079 CG5123 CG4209 CG9842 CG31481 CG31481 CG1921 CG31774 CG4264 .
TRiP has 2 RNAi stocks for FBgn0004390 available for purchase.
VDRC has 3 RNAi stocks for FBgn0004390 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain276 ± 84 of 4 2.00Up
Head124 ± 54 of 4 0.90None
Eye162 ± 64 of 4 1.17None
Thoracicoabdominal ganglion286 ± 34 of 4 2.10Up
Salivary gland189 ± 114 of 4 1.37Up
Crop157 ± 94 of 4 1.10None
Midgut186 ± 194 of 4 1.30None
Tubule92 ± 114 of 4 0.70Down
Hindgut122 ± 84 of 4 0.90None
Heart82 ± 114 of 4 0.60Down
Fat body78 ± 34 of 4 0.56Down
Ovary377 ± 164 of 4 2.70Up
Testis16 ± 14 of 4 0.10Down
Male accessory glands107 ± 44 of 4 0.80Down
Virgin spermatheca77 ± 74 of 4 0.56Down
Mated spermatheca67 ± 54 of 4 0.49Down
Adult carcass91 ± 74 of 4 0.70Down
Larval CNS314 ± 124 of 4 2.27Up
Larval Salivary gland43 ± 44 of 4 0.31Down
Larval midgut99 ± 114 of 4 0.72Down
Larval tubule96 ± 84 of 4 0.70Down
Larval hindgut99 ± 64 of 4 0.72Down
Larval fat body76 ± 74 of 4 0.50Down
Larval trachea151 ± 134 of 4 1.09None
Larval carcass81 ± 64 of 4 0.59Down
S2 cells (growing)728 ± 254 of 4 5.25Up
Whole fly138 ± 94 of 4

Looking for CG6721-RB. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime