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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6723-RA through 18771 annotations produced 1 hits



(CG6723):

Annotation Number : CG6723
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037895
Gbrowse : chr3R:7241939-7244389 (-) // 100.0 //
Probeset : 1636028_at
Accessions : protein= NP_650069;, nucleotide= NM_141812;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0008507 // sodium:iodide symporter activity /
FlyMine data for FBgn0037895.
BDGP gene expression has embryonic in situ data for CG6723: 15 pix of staining in 4 body parts.
Homophila reports that CG6723 is a close match (2e-11) to human gene SGLT2;SLC5A2 (NP_003032), a gene associated with Renal glucosuria, 233100 (3).
TRiP has 1 RNAi stocks for FBgn0037895 available for purchase.
VDRC has 1 RNAi stocks for FBgn0037895 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain553 94 of 423.50Up
Head220 114 of 4 9.30Up
Eye123 54 of 4 5.23Up
Thoracicoabdominal ganglion940 304 of 439.80Up
Salivary gland3 00 of 4 0.14Down
Crop1 00 of 4 0.00Down
Midgut1 00 of 4 0.10Down
Tubule1 00 of 4 0.10Down
Hindgut0 00 of 4 0.00Down
Heart54 24 of 4 2.31Up
Fat body4 30 of 4 0.19Down
Ovary1 00 of 4 0.00Down
Testis1 00 of 4 0.00Down
Male accessory glands4 10 of 4 0.20Down
Virgin spermatheca2 00 of 4 0.11Down
Mated spermatheca3 00 of 4 0.16Down
Adult carcass56 34 of 4 2.40Up
Larval CNS349 734 of 414.82Up
Larval Salivary gland1 00 of 4 0.05Down
Larval midgut1 00 of 4 0.05Down
Larval tubule2 10 of 4 0.10Down
Larval hindgut1 00 of 4 0.05Down
Larval fat body2 00 of 4 0.10Down
Larval trachea1 10 of 4 0.05Down
Larval carcass1 00 of 4 0.05Down
S2 cells (growing)1 00 of 4 0.06Down
Whole fly23 44 of 4

Looking for CG6723-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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