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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6724-RA through 18771 annotations produced 1 hits



(CG6724):

Annotation Number : CG6724
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032298
Gbrowse : chr2L:10768202-10769964 (-) // 100.0 //
Probeset : 1630344_at
Accessions : protein= NP_609452;, nucleotide= NM_135608;
Pathway : 5.8S rRNA
Interpro : LSU-rRNA) // inferred from sequence or structural similarity /// 0006364 // rRNA processing // inferred from electronic
FlyMine data for FBgn0032298.
BDGP gene expression has embryonic in situ data for CG6724: 12 pix of staining in 11 body parts.
Homophila reports that CG6724 is a close match (3e-11) to human gene PEX7;RCDP1 (NP_000279), a gene associated with Refsum disease, 266500 (3);Rhizomelic chondrodysplasia punctata, type 1, 215100 (3).
TRiP has 1 RNAi stocks for FBgn0032298 available for purchase.
VDRC has 2 RNAi stocks for FBgn0032298 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain94 ± 14 of 4 0.80Down
Head69 ± 44 of 4 0.60Down
Eye82 ± 14 of 4 0.73Down
Thoracicoabdominal ganglion80 ± 34 of 4 0.70Down
Salivary gland72 ± 34 of 4 0.64Down
Crop77 ± 34 of 4 0.70Down
Midgut85 ± 34 of 4 0.70Down
Tubule101 ± 164 of 4 0.90None
Hindgut52 ± 34 of 4 0.50Down
Heart71 ± 44 of 4 0.62Down
Fat body81 ± 24 of 4 0.71Down
Ovary171 ± 44 of 4 1.50Up
Testis39 ± 14 of 4 0.30Down
Male accessory glands196 ± 124 of 4 1.70Up
Virgin spermatheca77 ± 74 of 4 0.68Down
Mated spermatheca121 ± 54 of 4 1.06None
Adult carcass58 ± 14 of 4 0.50Down
Larval CNS209 ± 64 of 4 1.83Up
Larval Salivary gland166 ± 54 of 4 1.46Up
Larval midgut63 ± 74 of 4 0.56Down
Larval tubule39 ± 34 of 4 0.30Down
Larval hindgut76 ± 84 of 4 0.67Down
Larval fat body35 ± 24 of 4 0.30Down
Larval trachea187 ± 374 of 4 1.64Up
Larval carcass130 ± 274 of 4 1.14None
S2 cells (growing)227 ± 74 of 4 1.99Up
Whole fly114 ± 64 of 4

Looking for CG6724-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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