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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6725-RA through 18771 annotations produced 1 hits



Sulfated (Sulf1):

Annotation Number : CG6725
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040271
Gbrowse : chr3R:12136255-12140853 (-) // 100.0 //
Probeset : 1635007_at
Accessions : protein= NP_524987;, nucleotide= NM_080248;
Pathway : 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005783 // endoplasmic reticulum
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0008449 // N-acetylglucosamine-6-sulfatase acti
FlyMine data for FBgn0040271.
BDGP gene expression has embryonic in situ data for Sulf1: 41 pix of staining in 23 body parts.
Homophila reports that CG6725 is a close match (1e-78) to human gene G6S;GNS (NP_002067), a gene associated with Mucopolysaccharidosis type IIID, 252940 (3).
VDRC has 5 RNAi stocks for FBgn0040271 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain307 ± 54 of 4 4.60Up
Head229 ± 224 of 4 3.40Up
Eye70 ± 64 of 4 1.04None
Thoracicoabdominal ganglion214 ± 94 of 4 3.20Up
Salivary gland9 ± 30 of 4 0.15Down
Crop266 ± 304 of 4 4.00Up
Midgut172 ± 34 of 4 2.50Up
Tubule14 ± 13 of 4 0.20Down
Hindgut218 ± 24 of 4 3.20Up
Heart16 ± 04 of 4 0.24Down
Fat body12 ± 63 of 4 0.18Down
Ovary97 ± 24 of 4 1.40None
Testis69 ± 44 of 4 1.00None
Male accessory glands49 ± 34 of 4 0.70None
Virgin spermatheca38 ± 54 of 4 0.57None
Mated spermatheca63 ± 54 of 4 0.93None
Adult carcass42 ± 34 of 4 0.60None
Larval CNS144 ± 204 of 4 2.14Up
Larval Salivary gland22 ± 04 of 4 0.33Down
Larval midgut85 ± 64 of 4 1.27None
Larval tubule34 ± 54 of 4 0.50Down
Larval hindgut117 ± 44 of 4 1.73Up
Larval fat body6 ± 10 of 4 0.10Down
Larval trachea30 ± 64 of 4 0.46Down
Larval carcass57 ± 64 of 4 0.85None
S2 cells (growing)97 ± 74 of 4 1.45None
Whole fly67 ± 104 of 4

Looking for CG6725-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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