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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6727-RA through 18771 annotations produced 1 hits



gomdanji (gom):

Annotation Number : CG6727
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029084
Gbrowse : chr2R:18027439-18028842 (+) // 100.0 //
Probeset : 1638676_at
Accessions : protein= NP_524659;, nucleotide= NM_079920;
Interpro : 0005509 // calcium ion binding // non-traceable author statement
FlyMine data for FBgn0029084.
VDRC has 2 RNAi stocks for FBgn0029084 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.10Down
Head1 ± 00 of 4 0.10Down
Eye1 ± 00 of 4 0.17Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.10Down
Salivary gland3 ± 10 of 4 0.33Down
Crop2 ± 10 of 4 0.20Down
Midgut0 ± 00 of 4 0.10Down
Tubule1 ± 00 of 4 0.20Down
Hindgut0 ± 00 of 4 0.10Down
Heart0 ± 00 of 4 0.05Down
Fat body3 ± 30 of 4 0.30Down
Ovary0 ± 00 of 4 0.00Down
Testis83 ± 34 of 4 7.90Up
Male accessory glands1 ± 00 of 4 0.20Down
Virgin spermatheca2 ± 10 of 4 0.20Down
Mated spermatheca3 ± 10 of 4 0.36Down
Adult carcass3 ± 20 of 4 0.30None
Larval CNS3 ± 10 of 4 0.29Down
Larval Salivary gland2 ± 10 of 4 0.20Down
Larval midgut0 ± 00 of 4 0.08Down
Larval tubule0 ± 00 of 4 0.10Down
Larval hindgut2 ± 10 of 4 0.19Down
Larval fat body7 ± 50 of 4 0.70None
Larval trachea2 ± 20 of 4 0.25Down
Larval carcass0 ± 00 of 4 0.07Down
S2 cells (growing)2 ± 10 of 4 0.25Down
Whole fly10 ± 00 of 4

Looking for CG6727-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime