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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6733-RA through 18771 annotations produced 1 hits



(CG6733):

Annotation Number : CG6733
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039052
Gbrowse : chr3R:18923453-18924913 (+) // 100.0 //
Probeset : 1632228_at
Accessions : protein= NP_651123;, nucleotide= NM_142866;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0004046 // aminoacylase activity // inferred from electronic annotation /// 0004046 // aminoacylase activity // non-trac
FlyMine data for FBgn0039052.
Homophila reports that CG6733 is a close match (6e-99) to human gene ACY1;ACY1D (NP_000657), a gene associated with Aminoacylase 1 deficiency, 609924 (3).
TRiP has 2 RNAi stocks for FBgn0039052 available for purchase.
VDRC has 3 RNAi stocks for FBgn0039052 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain15 ± 03 of 4 0.10Down
Head36 ± 34 of 4 0.20Down
Eye12 ± 42 of 4 0.07Down
Thoracicoabdominal ganglion10 ± 00 of 4 0.10Down
Salivary gland10 ± 50 of 4 0.06Down
Crop10 ± 20 of 4 0.10Down
Midgut10 ± 10 of 4 0.10Down
Tubule4798 ± 374 of 427.60Up
Hindgut251 ± 344 of 4 1.40None
Heart156 ± 184 of 4 0.90None
Fat body20 ± 103 of 4 0.12Down
Ovary2 ± 10 of 4 0.00Down
Testis3 ± 10 of 4 0.00Down
Male accessory glands5 ± 10 of 4 0.00Down
Virgin spermatheca15 ± 32 of 4 0.09Down
Mated spermatheca13 ± 41 of 4 0.08Down
Adult carcass39 ± 13 of 4 0.20Down
Larval CNS3 ± 20 of 4 0.02Down
Larval Salivary gland5 ± 10 of 4 0.03Down
Larval midgut8 ± 20 of 4 0.05Down
Larval tubule1624 ± 1244 of 4 9.30Up
Larval hindgut23 ± 31 of 4 0.14Down
Larval fat body3 ± 10 of 4 0.00Down
Larval trachea5 ± 50 of 4 0.03Down
Larval carcass9 ± 20 of 4 0.05Down
S2 cells (growing)5 ± 10 of 4 0.03Down
Whole fly173 ± 144 of 4

Looking for CG6733-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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