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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6737-RA through 18771 annotations produced 1 hits



Vacuolar H[+] ATPase subunit 16-5 (Vha16-5):

Annotation Number : CG6737
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032294
Gbrowse : chr2L:10736375-10736957 (-) // 100.0 //
Probeset : 1625639_at
Accessions : protein= NP_609447;, nucleotide= NM_135603;
Pathway : "0000220 // vacuolar proton-transporting V-type ATPase
Interpro : V0 domain // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annota
FlyMine data for FBgn0032294.
TRiP has 1 RNAi stocks for FBgn0032294 available for purchase.
VDRC has 4 RNAi stocks for FBgn0032294 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.10Down
Head5 10 of 4 0.20Down
Eye1 00 of 4 0.06Down
Thoracicoabdominal ganglion3 10 of 4 0.10Down
Salivary gland13 50 of 4 0.41Down
Crop6 20 of 4 0.20Down
Midgut8 20 of 4 0.30Down
Tubule7 00 of 4 0.20Down
Hindgut4 10 of 4 0.10Down
Heart1 00 of 4 0.05Down
Fat body3 10 of 4 0.09Down
Ovary2 00 of 4 0.10Down
Testis318 194 of 4 9.50Up
Male accessory glands8 40 of 4 0.20Down
Virgin spermatheca1 00 of 4 0.06Down
Mated spermatheca3 10 of 4 0.11Down
Adult carcass8 20 of 4 0.20Down
Larval CNS3 10 of 4 0.11Down
Larval Salivary gland8 10 of 4 0.27Down
Larval midgut2 00 of 4 0.06Down
Larval tubule5 00 of 4 0.10Down
Larval hindgut4 10 of 4 0.13Down
Larval fat body71 223 of 4 2.10None
Larval trachea5 50 of 4 0.16Down
Larval carcass6 20 of 4 0.20Down
S2 cells (growing)2 10 of 4 0.09Down
Whole fly33 13 of 4

Looking for CG6737-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime