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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6763-RA through 18771 annotations produced 1 hits



(CG6763):

Annotation Number : CG6763
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039069
Gbrowse : chr3R:19109723-19111759 (+) // 100.0 //
Probeset : 1625104_at
Accessions : protein= NP_651138;, nucleotide= NM_142881;
Pathway : 0017090 // meprin A complex // inferred from sequence or structural similarity
Interpro : 0004222 // metalloendopeptidase activity // inferred from sequence or structural similarity /// 0004222 // metalloendope
FlyMine data for FBgn0039069.
BDGP gene expression has embryonic in situ data for CG6763: 9 pix of staining in 2 body parts.
VDRC has 2 RNAi stocks for FBgn0039069 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 ± 14 of 4 3.10Up
Head7 ± 10 of 4 1.20None
Eye6 ± 10 of 4 1.06None
Thoracicoabdominal ganglion14 ± 42 of 4 2.40None
Salivary gland7 ± 50 of 4 1.28None
Crop6 ± 11 of 4 1.20None
Midgut3 ± 00 of 4 0.50None
Tubule9 ± 01 of 4 1.60Up
Hindgut8 ± 11 of 4 1.40None
Heart4 ± 10 of 4 0.79None
Fat body4 ± 20 of 4 0.82None
Ovary3 ± 11 of 4 0.50None
Testis8 ± 12 of 4 1.40None
Male accessory glands7 ± 20 of 4 1.20None
Virgin spermatheca2 ± 10 of 4 0.48None
Mated spermatheca1 ± 00 of 4 0.25Down
Adult carcass3 ± 00 of 4 0.60None
Larval CNS13 ± 14 of 4 2.25Up
Larval Salivary gland322 ± 284 of 453.89Up
Larval midgut3 ± 10 of 4 0.56None
Larval tubule10 ± 11 of 4 1.70Up
Larval hindgut8 ± 01 of 4 1.33None
Larval fat body6 ± 10 of 4 1.10None
Larval trachea6 ± 41 of 4 1.11None
Larval carcass30 ± 64 of 4 5.11Up
S2 cells (growing)6 ± 11 of 4 1.06None
Whole fly6 ± 00 of 4

Looking for CG6763-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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