FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG6767-RA through 18771 annotations produced 1 hits

(CG6767):

Annotation Number : CG6767
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036030
Gbrowse : chr3L:9676675-9689793 (-) // 100.0 //
Probeset : 1634130_a_at
Accessions : protein= NP_648345; /// NP_729528;, nucleotide= NM_140088; /// NM_168360;
Interpro : 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004749 // ribose phosphate diphosphokinase
FlyMine data for FBgn0036030.
BDGP gene expression has embryonic in situ data for CG6767: 16 pix of staining in 14 body parts.
Homophila reports that CG6767 is a close match (1e-158) to human gene CMTX5;PRPS1 (NP_002755), a gene associated with Arts syndrome, 301835 (3);Charcot-Marie-Tooth disease, X-linked recessive, 5, 311070 (3);Gout, PRPS-related, 300661 (3);Phosphoribosylpyrophosphate synthetase superactivity, 300661 (3).
BioGrid reports that CG6767 interacts with CG6767 CG9238 .
TRiP has 1 RNAi stocks for FBgn0036030 available for purchase.
VDRC has 3 RNAi stocks for FBgn0036030 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	844 ± 36	4 of 4	1.00	None
Head	1207 ± 12	4 of 4	1.40	Up
Eye	736 ± 53	4 of 4	0.87	None
Thoracicoabdominal ganglion	796 ± 7	4 of 4	0.90	None
Salivary gland	493 ± 24	4 of 4	0.58	Down
Crop	1043 ± 23	4 of 4	1.20	Up
Midgut	272 ± 3	4 of 4	0.30	Down
Tubule	1240 ± 59	4 of 4	1.50	Up
Hindgut	657 ± 35	4 of 4	0.80	Down
Heart	871 ± 95	4 of 4	1.03	None
Fat body	2442 ± 147	4 of 4	2.88	Up
Ovary	938 ± 12	4 of 4	1.10	None
Testis	187 ± 11	4 of 4	0.20	Down
Male accessory glands	824 ± 38	4 of 4	1.00	None
Virgin spermatheca	3123 ± 210	4 of 4	3.68	Up
Mated spermatheca	2048 ± 216	4 of 4	2.41	Up
Adult carcass	986 ± 73	4 of 4	1.20	None
Larval CNS	1092 ± 99	4 of 4	1.29	Up
Larval Salivary gland	532 ± 52	4 of 4	0.63	Down
Larval midgut	443 ± 16	4 of 4	0.52	Down
Larval tubule	498 ± 25	4 of 4	0.60	Down
Larval hindgut	591 ± 38	4 of 4	0.70	Down
Larval fat body	4441 ± 450	4 of 4	5.20	Up
Larval trachea	528 ± 48	4 of 4	0.62	Down
Larval carcass	567 ± 73	4 of 4	0.67	Down
S2 cells (growing)	942 ± 36	4 of 4	1.11	None
Whole fly	848 ± 49	4 of 4

Looking for CG6767-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720