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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG6773-RA through 18771 annotations produced 1 hits

sec13 (sec13):

Annotation Number : CG6773
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024509
Gbrowse : chr3R:19182289-19184254 (+) // 100.0 //
Probeset : 1637124_at
Accessions : protein= NP_651977;, nucleotide= NM_143720;
FlyMine data for FBgn0024509.
BDGP gene expression has embryonic in situ data for sec13: 11 pix of staining in 17 body parts.
BioGrid reports that CG6773 interacts with CG8266 .
TRiP has 1 RNAi stocks for FBgn0024509 available for purchase.
VDRC has 2 RNAi stocks for FBgn0024509 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain91 144 of 4 0.40Down
Head148 284 of 4 0.70None
Eye179 94 of 4 0.83None
Thoracicoabdominal ganglion103 114 of 4 0.50Down
Salivary gland1266 1324 of 4 5.89Up
Crop181 94 of 4 0.80None
Midgut199 204 of 4 0.90None
Tubule492 454 of 4 2.30Up
Hindgut154 124 of 4 0.70Down
Heart310 124 of 4 1.44Up
Fat body327 354 of 4 1.52Up
Ovary403 74 of 4 1.90Up
Testis112 124 of 4 0.50Down
Male accessory glands951 274 of 4 4.40Up
Virgin spermatheca422 234 of 4 1.97Up
Mated spermatheca540 364 of 4 2.51Up
Adult carcass144 224 of 4 0.70Down
Larval CNS325 164 of 4 1.52Up
Larval Salivary gland1544 684 of 4 7.19Up
Larval midgut297 144 of 4 1.38Up
Larval tubule454 284 of 4 2.10Up
Larval hindgut245 264 of 4 1.14None
Larval fat body262 234 of 4 1.20None
Larval trachea416 544 of 4 1.94Up
Larval carcass342 434 of 4 1.59None
S2 cells (growing)501 244 of 4 2.33Up
Whole fly215 164 of 4

Looking for CG6773-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime