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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6776-RA through 18771 annotations produced 1 hits



(CG6776):

Annotation Number : CG6776
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035904
Gbrowse : chr3L:8511987-8513410 (+) // 100.0 //
Probeset : 1626536_at
Accessions : protein= NP_648234;, nucleotide= NM_139977;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : "0004364 // glutathione transferase activity // inferred from sequence or structural similarity /// 0004364 // glutathio
FlyMine data for FBgn0035904.
BDGP gene expression has embryonic in situ data for CG6776: 8 pix of staining in 2 body parts.
TRiP has 1 RNAi stocks for FBgn0035904 available for purchase.
VDRC has 1 RNAi stocks for FBgn0035904 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain33 ± 24 of 4 0.10Down
Head552 ± 344 of 4 1.70Up
Eye277 ± 74 of 4 0.88None
Thoracicoabdominal ganglion122 ± 54 of 4 0.40Down
Salivary gland104 ± 44 of 4 0.33Down
Crop507 ± 114 of 4 1.60Up
Midgut1899 ± 614 of 4 6.00Up
Tubule2248 ± 2824 of 4 7.10Up
Hindgut810 ± 394 of 4 2.60Up
Heart745 ± 194 of 4 2.35Up
Fat body695 ± 514 of 4 2.20Up
Ovary29 ± 14 of 4 0.10Down
Testis184 ± 84 of 4 0.60Down
Male accessory glands225 ± 144 of 4 0.70Down
Virgin spermatheca584 ± 224 of 4 1.85Up
Mated spermatheca671 ± 324 of 4 2.12Up
Adult carcass621 ± 224 of 4 2.00Up
Larval CNS73 ± 84 of 4 0.23Down
Larval Salivary gland183 ± 144 of 4 0.58Down
Larval midgut717 ± 114 of 4 2.27Up
Larval tubule468 ± 314 of 4 1.50Up
Larval hindgut594 ± 114 of 4 1.88Up
Larval fat body1503 ± 1864 of 4 4.80Up
Larval trachea930 ± 484 of 4 2.94Up
Larval carcass1527 ± 724 of 4 4.83Up
S2 cells (growing)609 ± 134 of 4 1.93Up
Whole fly316 ± 194 of 4

Looking for CG6776-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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