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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6781-RA through 18771 annotations produced 1 hits



sepia (se):

Annotation Number : CG6781
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086348
Gbrowse : chr3L:8513651-8514596 (+) // 100.0 //
Probeset : 1637801_at
Accessions : protein= NP_648235;, nucleotide= NM_139978;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : "0004364 // glutathione transferase activity // inferred from sequence or structural similarity /// 0004364 // glutathio
FlyMine data for FBgn0086348.
BioGrid reports that CG6781 interacts with CG7399 .
VDRC has 2 RNAi stocks for FBgn0086348 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10Down
Head253 ± 184 of 417.10Up
Eye1749 ± 2004 of 4117.82Up
Thoracicoabdominal ganglion5 ± 10 of 4 0.40Down
Salivary gland14 ± 20 of 4 0.94None
Crop2 ± 00 of 4 0.20Down
Midgut2 ± 10 of 4 0.20Down
Tubule15 ± 12 of 4 1.10None
Hindgut7 ± 21 of 4 0.50None
Heart4 ± 10 of 4 0.32Down
Fat body4 ± 20 of 4 0.27Down
Ovary3 ± 10 of 4 0.20Down
Testis2 ± 10 of 4 0.10Down
Male accessory glands3 ± 10 of 4 0.20Down
Virgin spermatheca4 ± 20 of 4 0.27Down
Mated spermatheca4 ± 10 of 4 0.29Down
Adult carcass2 ± 00 of 4 0.10Down
Larval CNS2 ± 20 of 4 0.17Down
Larval Salivary gland1 ± 00 of 4 0.12Down
Larval midgut1 ± 00 of 4 0.12Down
Larval tubule5 ± 10 of 4 0.40Down
Larval hindgut3 ± 10 of 4 0.21Down
Larval fat body6 ± 20 of 4 0.50None
Larval trachea19 ± 322 of 4 1.31None
Larval carcass6 ± 10 of 4 0.44Down
S2 cells (growing)1 ± 00 of 4 0.11Down
Whole fly14 ± 23 of 4

Looking for CG6781-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime