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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6794-RA through 18771 annotations produced 1 hits



Dorsal-related immunity factor (Dif):

Annotation Number : CG6794
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011274
Gbrowse : chr2L:17412943-17428195 (-) // 100.0 //
Probeset : 1633246_s_at
Accessions : protein= NP_001162998; /// NP_001162999; /// NP_523589; /// NP_724050;, nucleotide= NM_001169527; /// NM_001169528; /// NM_078865; /// NM_165216;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006952 // defense response // non-traceable author statement
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005634 //
FlyMine data for FBgn0011274.
BDGP gene expression has embryonic in situ data for Dif: 13 pix of staining in 3 body parts.
BioGrid reports that CG6794 interacts with CG6667 .
TRiP has 2 RNAi stocks for FBgn0011274 available for purchase.
VDRC has 3 RNAi stocks for FBgn0011274 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 14 of 4 1.10None
Head7 12 of 4 0.70None
Eye9 13 of 4 0.88None
Thoracicoabdominal ganglion11 14 of 4 1.10None
Salivary gland22 32 of 4 2.04Up
Crop8 03 of 4 0.80None
Midgut17 23 of 4 1.60None
Tubule12 03 of 4 1.10Up
Hindgut7 12 of 4 0.70None
Heart7 12 of 4 0.68None
Fat body9 23 of 4 0.91None
Ovary12 14 of 4 1.10None
Testis10 02 of 4 1.00None
Male accessory glands10 20 of 4 0.90None
Virgin spermatheca6 02 of 4 0.59None
Mated spermatheca8 12 of 4 0.78None
Adult carcass12 31 of 4 1.20None
Larval CNS16 24 of 4 1.56None
Larval Salivary gland18 23 of 4 1.66None
Larval midgut16 14 of 4 1.51None
Larval tubule22 24 of 4 2.10Up
Larval hindgut7 02 of 4 0.64None
Larval fat body13 13 of 4 1.20None
Larval trachea7 43 of 4 0.70None
Larval carcass9 02 of 4 0.85None
S2 cells (growing)15 14 of 4 1.43None
Whole fly10 22 of 4

Looking for CG6794-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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