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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6798-RA through 18771 annotations produced 1 hits



Dbeta2 (nAcRbeta-96A):

Annotation Number : CG6798
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004118
Gbrowse : chr3R:20334935-20340823 (-) // 100.0 //
Probeset : 1635349_a_at
Accessions : protein= NP_524483; /// NP_733002;, nucleotide= NM_079759; /// NM_170147;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // non-trac
Interpro : 0004872 // receptor activity // inferred from electronic annotation /// 0004889 // nicotinic acetylcholine-activated cat
FlyMine data for FBgn0004118.
Homophila reports that CG6798 is a close match (8e-11) to human gene GABRA2 (NP_000798), a gene associated with {Alcoholism, susceptibility to}, 103780 (3).
TRiP has 1 RNAi stocks for FBgn0004118 available for purchase.
VDRC has 4 RNAi stocks for FBgn0004118 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain485 ± 74 of 431.40Up
Head97 ± 44 of 4 6.30Up
Eye29 ± 24 of 4 1.88Up
Thoracicoabdominal ganglion452 ± 74 of 429.30Up
Salivary gland16 ± 62 of 4 1.09None
Crop8 ± 01 of 4 0.60Down
Midgut9 ± 00 of 4 0.60Down
Tubule7 ± 11 of 4 0.50Down
Hindgut6 ± 11 of 4 0.40Down
Heart2 ± 10 of 4 0.19Down
Fat body5 ± 30 of 4 0.34Down
Ovary2 ± 00 of 4 0.20Down
Testis9 ± 12 of 4 0.60Down
Male accessory glands7 ± 20 of 4 0.50None
Virgin spermatheca10 ± 23 of 4 0.68None
Mated spermatheca11 ± 13 of 4 0.73Down
Adult carcass13 ± 31 of 4 0.90None
Larval CNS185 ± 144 of 412.00Up
Larval Salivary gland5 ± 10 of 4 0.32Down
Larval midgut7 ± 00 of 4 0.51Down
Larval tubule8 ± 11 of 4 0.50Down
Larval hindgut3 ± 01 of 4 0.24Down
Larval fat body8 ± 01 of 4 0.50Down
Larval trachea2 ± 10 of 4 0.19Down
Larval carcass2 ± 00 of 4 0.16Down
S2 cells (growing)13 ± 14 of 4 0.86None
Whole fly15 ± 04 of 4

Looking for CG6798-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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