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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6802-RA through 18771 annotations produced 1 hits



Cyp313a4 (Cyp313a4):

Annotation Number : CG6802
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038076
Gbrowse : chr3R:8505096-8507027 (-) // 100.0 //
Probeset : 1636292_at
Accessions : protein= NP_650224;, nucleotide= NM_141967;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0038076.
Homophila reports that CG6802 is a close match (1e-11) to human gene CPD6;CYP2D6;P450DB1 (NP_001020332), a gene associated with Codeine sensitivity (3);Debrisoquine sensitivity (3);{?Parkinsonism, susceptibility to} (1).
VDRC has 1 RNAi stocks for FBgn0038076 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.20Down
Head21 34 of 4 2.30Up
Eye12 04 of 4 1.32None
Thoracicoabdominal ganglion5 20 of 4 0.60None
Salivary gland15 31 of 4 1.71None
Crop14 23 of 4 1.60None
Midgut28 24 of 4 3.10Up
Tubule15 22 of 4 1.60Up
Hindgut45 34 of 4 5.00Up
Heart28 34 of 4 3.14Up
Fat body33 94 of 4 3.67Up
Ovary8 22 of 4 0.90None
Testis4 00 of 4 0.50None
Male accessory glands7 10 of 4 0.80None
Virgin spermatheca7 02 of 4 0.80None
Mated spermatheca10 12 of 4 1.10None
Adult carcass29 14 of 4 3.20Up
Larval CNS5 21 of 4 0.63None
Larval Salivary gland0 00 of 4 0.10Down
Larval midgut16 11 of 4 1.81Up
Larval tubule1 00 of 4 0.20Down
Larval hindgut12 23 of 4 1.34None
Larval fat body2 00 of 4 0.20Down
Larval trachea169 424 of 418.48Up
Larval carcass16 11 of 4 1.79Up
S2 cells (growing)1 00 of 4 0.20Down
Whole fly9 12 of 4

Looking for CG6802-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime