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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6803-RB through 18771 annotations produced 2 hits



Zeelin1 (Mf):

Annotation Number : CG6803
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038294
Gbrowse : chr3R:10996346-11005992 (-) // 100.0 //
Probeset : 1635372_a_at
Accessions : protein= NP_001163609; /// NP_001163610; /// NP_001163611; /// NP_001163612; /// NP_001163613; /// NP_650423; /// NP_731969; /// NP_731970; /// NP_731971; /// NP_731972;, nucleotide= NM_001170138; /// NM_001170139; /// NM_001170140; /// NM_001170141; /// NM_001170142; /// NM_142166; /// NM_169612; /// NM_169613; /// NM_169614; /// NM_169615;
Pathway : 0031672 // A band // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038294.
BDGP gene expression has embryonic in situ data for CG6803: 9 pix of staining in 2 body parts.
BioGrid reports that CG6803 interacts with CG9640 CG9712 CG8349 .
VDRC has 5 RNAi stocks for FBgn0038294 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain67 54 of 4 0.00Down
Head3470 1594 of 4 1.10None
Eye766 1554 of 4 0.25Down
Thoracicoabdominal ganglion337 504 of 4 0.10Down
Salivary gland92 114 of 4 0.03Down
Crop8375 5534 of 4 2.80Up
Midgut1767 584 of 4 0.60Down
Tubule105 54 of 4 0.00Down
Hindgut4739 954 of 4 1.60Up
Heart5804 944 of 4 1.92Up
Fat body439 1264 of 4 0.15Down
Ovary110 44 of 4 0.00Down
Testis167 24 of 4 0.10Down
Male accessory glands1769 1734 of 4 0.60Down
Virgin spermatheca562 324 of 4 0.19Down
Mated spermatheca950 794 of 4 0.31Down
Adult carcass6547 5234 of 4 2.20Up
Larval CNS36 54 of 4 0.01Down
Larval Salivary gland35 23 of 4 0.01Down
Larval midgut1426 804 of 4 0.47Down
Larval tubule119 104 of 4 0.00Down
Larval hindgut3979 1314 of 4 1.32Up
Larval fat body22 52 of 4 0.00Down
Larval trachea1142 5814 of 4 0.38Down
Larval carcass6129 5754 of 4 2.03Up
S2 cells (growing)2 10 of 4 0.00Down
Whole fly3023 2774 of 4



Zeelin1 (Mf):

Annotation Number : CG6803
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038294
Gbrowse : chr3R:11001523-11005992 (-) // 100.0 //
Probeset : 1636600_a_at
Accessions : protein= NP_001163609; /// NP_001163610; /// NP_001163611; /// NP_001163612; /// NP_001163613; /// NP_650423; /// NP_731969; /// NP_731970; /// NP_731971; /// NP_731972;, nucleotide= NM_001170138; /// NM_001170139; /// NM_001170140; /// NM_001170141; /// NM_001170142; /// NM_142166; /// NM_169612; /// NM_169613; /// NM_169614; /// NM_169615;
Pathway : 0031672 // A band // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038294.
BDGP gene expression has embryonic in situ data for CG6803: 9 pix of staining in 2 body parts.
BioGrid reports that CG6803 interacts with CG9640 CG9712 CG8349 .
VDRC has 5 RNAi stocks for FBgn0038294 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain78 64 of 4 0.00Down
Head1979 1274 of 4 0.60Down
Eye307 544 of 4 0.10Down
Thoracicoabdominal ganglion207 544 of 4 0.10Down
Salivary gland52 143 of 4 0.02Down
Crop7561 4964 of 4 2.40Up
Midgut914 214 of 4 0.30Down
Tubule77 54 of 4 0.00Down
Hindgut4198 834 of 4 1.30Up
Heart5337 2224 of 4 1.70Up
Fat body263 784 of 4 0.08Down
Ovary94 44 of 4 0.00Down
Testis111 24 of 4 0.00Down
Male accessory glands955 484 of 4 0.30Down
Virgin spermatheca157 134 of 4 0.05Down
Mated spermatheca198 344 of 4 0.06Down
Adult carcass6808 4304 of 4 2.20Up
Larval CNS31 54 of 4 0.01Down
Larval Salivary gland10 30 of 4 0.00Down
Larval midgut548 324 of 4 0.18Down
Larval tubule108 74 of 4 0.00Down
Larval hindgut3286 1354 of 4 1.05None
Larval fat body14 31 of 4 0.00Down
Larval trachea700 4634 of 4 0.22Down
Larval carcass4899 4484 of 4 1.56Up
S2 cells (growing)0 00 of 4 0.00Down
Whole fly3133 3264 of 4

Looking for CG6803-RB. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime