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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6805-RA through 18771 annotations produced 1 hits



(CG6805):

Annotation Number : CG6805
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034179
Gbrowse : chr2R:12892957-12895109 (+) // 100.0 //
Probeset : 1626988_at
Accessions : protein= NP_611178;, nucleotide= NM_137334;
Interpro : 0004437 // inositol or phosphatidylinositol phosphatase activity // inferred from electronic annotation /// 0046030 // i
FlyMine data for FBgn0034179.
BDGP gene expression has embryonic in situ data for CG6805: 21 pix of staining in 8 body parts.
Homophila reports that CG6805 is a close match (2e-37) to human gene LOCR;NPHL2;OCRL;OCRL1 (NP_001578), a gene associated with Dent syndrome, 300009 (3);Lowe syndrome, 309000 (3).
TRiP has 2 RNAi stocks for FBgn0034179 available for purchase.
VDRC has 1 RNAi stocks for FBgn0034179 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain111 ± 34 of 4 1.30None
Head272 ± 24 of 4 3.10Up
Eye459 ± 224 of 4 5.27Up
Thoracicoabdominal ganglion150 ± 24 of 4 1.70Up
Salivary gland287 ± 194 of 4 3.30Up
Crop206 ± 64 of 4 2.40Up
Midgut35 ± 44 of 4 0.40Down
Tubule106 ± 44 of 4 1.20Up
Hindgut194 ± 64 of 4 2.20Up
Heart184 ± 34 of 4 2.12Up
Fat body491 ± 354 of 4 5.65Up
Ovary79 ± 44 of 4 0.90None
Testis16 ± 04 of 4 0.20Down
Male accessory glands79 ± 94 of 4 0.90None
Virgin spermatheca394 ± 204 of 4 4.52Up
Mated spermatheca379 ± 254 of 4 4.36Up
Adult carcass244 ± 134 of 4 2.80Up
Larval CNS89 ± 54 of 4 1.02None
Larval Salivary gland123 ± 44 of 4 1.41Up
Larval midgut87 ± 84 of 4 1.00None
Larval tubule91 ± 24 of 4 1.10None
Larval hindgut384 ± 164 of 4 4.41Up
Larval fat body93 ± 64 of 4 1.10None
Larval trachea240 ± 214 of 4 2.76Up
Larval carcass625 ± 154 of 4 7.18Up
S2 cells (growing)412 ± 104 of 4 4.73Up
Whole fly87 ± 64 of 4

Looking for CG6805-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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