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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6808-RA through 18771 annotations produced 1 hits



(CG6808):

Annotation Number : CG6808
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037921
Gbrowse : chr3R:7447187-7451366 (-) // 100.0 //
Probeset : 1630730_at
Accessions : protein= NP_731602;, nucleotide= NM_169411;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0037921.
Homophila reports that CG6808 is a close match (5e-11) to human gene NIL2A;TCF8;ZEB1 (NP_110378), a gene associated with Corneal dystrophy, posterior polymorphous, 3, 609141 (3).
BioGrid reports that CG6808 interacts with CG6921 CG9326 CG9836 .
TRiP has 2 RNAi stocks for FBgn0037921 available for purchase.
VDRC has 2 RNAi stocks for FBgn0037921 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain21 ± 14 of 4 1.10None
Head20 ± 04 of 4 1.00None
Eye50 ± 94 of 4 2.53Up
Thoracicoabdominal ganglion17 ± 24 of 4 0.90None
Salivary gland12 ± 20 of 4 0.63Down
Crop13 ± 14 of 4 0.70Down
Midgut5 ± 10 of 4 0.30Down
Tubule8 ± 01 of 4 0.40Down
Hindgut8 ± 04 of 4 0.40Down
Heart11 ± 13 of 4 0.55Down
Fat body7 ± 12 of 4 0.37Down
Ovary41 ± 14 of 4 2.10Up
Testis37 ± 34 of 4 1.90Up
Male accessory glands12 ± 04 of 4 0.60Down
Virgin spermatheca7 ± 02 of 4 0.37Down
Mated spermatheca10 ± 13 of 4 0.50Down
Adult carcass10 ± 21 of 4 0.50Down
Larval CNS38 ± 24 of 4 1.93Up
Larval Salivary gland24 ± 14 of 4 1.23None
Larval midgut5 ± 10 of 4 0.29Down
Larval tubule8 ± 13 of 4 0.40Down
Larval hindgut8 ± 04 of 4 0.44Down
Larval fat body15 ± 23 of 4 0.80None
Larval trachea16 ± 14 of 4 0.83None
Larval carcass10 ± 13 of 4 0.52Down
S2 cells (growing)24 ± 04 of 4 1.21None
Whole fly20 ± 14 of 4

Looking for CG6808-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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