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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6812-RA through 18771 annotations produced 1 hits



(CG6812):

Annotation Number : CG6812
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036843
Gbrowse : chr3L:19056271-19059249 (+) // 100.0 //
Probeset : 1631456_at
Accessions : protein= NP_649086;, nucleotide= NM_140829;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0008324 // cation transmembrane transporter activity /
FlyMine data for FBgn0036843.
BDGP gene expression has embryonic in situ data for CG6812: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0036843 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain675 ± 154 of 4 3.10Up
Head286 ± 164 of 4 1.30Up
Eye141 ± 74 of 4 0.65Down
Thoracicoabdominal ganglion1076 ± 144 of 4 5.00Up
Salivary gland448 ± 174 of 4 2.06Up
Crop266 ± 134 of 4 1.20Up
Midgut44 ± 14 of 4 0.20Down
Tubule1092 ± 264 of 4 5.00Up
Hindgut578 ± 194 of 4 2.70Up
Heart534 ± 574 of 4 2.46Up
Fat body548 ± 514 of 4 2.52Up
Ovary361 ± 74 of 4 1.70Up
Testis48 ± 14 of 4 0.20Down
Male accessory glands126 ± 44 of 4 0.60Down
Virgin spermatheca276 ± 114 of 4 1.27Up
Mated spermatheca301 ± 194 of 4 1.39Up
Adult carcass324 ± 44 of 4 1.50Up
Larval CNS424 ± 184 of 4 1.95Up
Larval Salivary gland1172 ± 964 of 4 5.39Up
Larval midgut140 ± 124 of 4 0.65Down
Larval tubule778 ± 204 of 4 3.60Up
Larval hindgut931 ± 214 of 4 4.28Up
Larval fat body191 ± 364 of 4 0.90None
Larval trachea282 ± 284 of 4 1.30Up
Larval carcass1131 ± 854 of 4 5.20Up
S2 cells (growing)90 ± 04 of 4 0.42Down
Whole fly217 ± 44 of 4

Looking for CG6812-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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