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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6834-RA through 18771 annotations produced 1 hits



(CG6834):

Annotation Number : CG6834
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037935
Gbrowse : chr3R:7510390-7513852 (-) // 100.0 //
Probeset : 1627516_at
Accessions : protein= NP_650104;, nucleotide= NM_141847;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037935.
VDRC has 2 RNAi stocks for FBgn0037935 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain130 ± 34 of 4 1.70Up
Head239 ± 174 of 4 3.10Up
Eye169 ± 24 of 4 2.20Up
Thoracicoabdominal ganglion172 ± 134 of 4 2.20Up
Salivary gland15 ± 40 of 4 0.21Down
Crop5 ± 11 of 4 0.10Down
Midgut305 ± 84 of 4 4.00Up
Tubule160 ± 174 of 4 2.10Up
Hindgut83 ± 54 of 4 1.10None
Heart137 ± 44 of 4 1.79Up
Fat body384 ± 114 of 4 5.00Up
Ovary2 ± 01 of 4 0.00Down
Testis2 ± 00 of 4 0.00Down
Male accessory glands423 ± 404 of 4 5.50Up
Virgin spermatheca440 ± 144 of 4 5.73Up
Mated spermatheca320 ± 94 of 4 4.16Up
Adult carcass172 ± 134 of 4 2.20Up
Larval CNS77 ± 154 of 4 1.01None
Larval Salivary gland9 ± 12 of 4 0.12Down
Larval midgut638 ± 294 of 4 8.31Up
Larval tubule58 ± 24 of 4 0.80Down
Larval hindgut111 ± 54 of 4 1.45Up
Larval fat body187 ± 254 of 4 2.40Up
Larval trachea10 ± 53 of 4 0.13Down
Larval carcass35 ± 44 of 4 0.46Down
S2 cells (growing)3 ± 00 of 4 0.04Down
Whole fly76 ± 44 of 4

Looking for CG6834-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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