FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG6840-RA through 18771 annotations produced 1 hits

chr2L:17409695-17410368 (-) // 100.0 // (Rpb11):

Annotation Number : CG6840
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1638576_at
Accessions : protein= , nucleotide= NP_609836;
Pathway : 0006350 // transcription // non-traceable author statement /// 0006350 // transcription // inferred from electronic anno
Interpro : "0005634 // nucleus // non-traceable author statement /// 0005634 // nucleus // inferred from electronic annotation ///
FlyMine data for full length.
BioGrid reports that CG6840 interacts with CG7885 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	279 ± 9	4 of 4	1.10	Up
Head	181 ± 6	4 of 4	0.70	Down
Eye	347 ± 20	4 of 4	1.42	Up
Thoracicoabdominal ganglion	286 ± 12	4 of 4	1.20	None
Salivary gland	181 ± 5	4 of 4	0.74	Down
Crop	223 ± 13	4 of 4	0.90	None
Midgut	120 ± 3	4 of 4	0.50	Down
Tubule	105 ± 2	4 of 4	0.40	Down
Hindgut	137 ± 5	4 of 4	0.60	Down
Heart	142 ± 5	4 of 4	0.58	Down
Fat body	93 ± 7	4 of 4	0.38	Down
Ovary	432 ± 3	4 of 4	1.80	Up
Testis	142 ± 1	4 of 4	0.60	Down
Male accessory glands	183 ± 11	4 of 4	0.80	Down
Virgin spermatheca	71 ± 3	4 of 4	0.29	Down
Mated spermatheca	98 ± 8	4 of 4	0.40	Down
Adult carcass	114 ± 8	4 of 4	0.50	Down
Larval CNS	570 ± 15	4 of 4	2.34	Up
Larval Salivary gland	287 ± 11	4 of 4	1.18	None
Larval midgut	98 ± 4	4 of 4	0.40	Down
Larval tubule	180 ± 9	4 of 4	0.70	Down
Larval hindgut	190 ± 7	4 of 4	0.78	Down
Larval fat body	210 ± 6	4 of 4	0.90	None
Larval trachea	414 ± 34	4 of 4	1.70	Up
Larval carcass	211 ± 7	4 of 4	0.87	None
S2 cells (growing)	832 ± 13	4 of 4	3.41	Up
Whole fly	244 ± 15	4 of 4

Looking for CG6840-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720