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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6847-RA through 18771 annotations produced 1 hits



(CG6847):

Annotation Number : CG6847
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030884
Gbrowse : chrX:17805495-17818199 (+) // 100.0 //
Probeset : 1623325_at
Accessions : protein= NP_573259;, nucleotide= NM_133031;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004806 // triglyceride lipase activity // infe
FlyMine data for FBgn0030884.
BDGP gene expression has embryonic in situ data for CG6847: 35 pix of staining in 20 body parts.
Homophila reports that CG6847 is a close match (8e-36) to human gene HDLCQ11;LIPD;LPL (NP_000228), a gene associated with Combined hyperlipidemia, familial, 144250 (3);Lipoprotein lipase deficiency, 238600 (3);[High density lipoprotein cholesterol level QTL 11] (3).
BioGrid reports that CG6847 interacts with CG8232 .
VDRC has 1 RNAi stocks for FBgn0030884 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain41 ± 24 of 4 2.30Up
Head21 ± 04 of 4 1.20None
Eye13 ± 23 of 4 0.72None
Thoracicoabdominal ganglion48 ± 14 of 4 2.60Up
Salivary gland25 ± 51 of 4 1.37None
Crop62 ± 34 of 4 3.40Up
Midgut29 ± 14 of 4 1.60Up
Tubule21 ± 13 of 4 1.20Up
Hindgut58 ± 54 of 4 3.20Up
Heart21 ± 04 of 4 1.15None
Fat body44 ± 114 of 4 2.46Up
Ovary12 ± 13 of 4 0.70None
Testis29 ± 04 of 4 1.60Up
Male accessory glands14 ± 11 of 4 0.80None
Virgin spermatheca25 ± 13 of 4 1.37None
Mated spermatheca34 ± 24 of 4 1.86Up
Adult carcass37 ± 14 of 4 2.10Up
Larval CNS27 ± 44 of 4 1.49Up
Larval Salivary gland8 ± 20 of 4 0.47Down
Larval midgut32 ± 24 of 4 1.80Up
Larval tubule3 ± 10 of 4 0.20Down
Larval hindgut28 ± 34 of 4 1.54None
Larval fat body9 ± 41 of 4 0.50None
Larval trachea321 ± 654 of 417.63Up
Larval carcass18 ± 04 of 4 1.03None
S2 cells (growing)7 ± 00 of 4 0.41Down
Whole fly18 ± 24 of 4

Looking for CG6847-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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