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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6856-RA through 18771 annotations produced 1 hits



dysbindin (dysb):

Annotation Number : CG6856
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036819
Gbrowse : chr3L:18860876-18862321 (+) // 100.0 //
Probeset : 1637720_at
Accessions : protein= NP_649064;, nucleotide= NM_140807;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0008021 // synaptic vesicle // inferred from direct assa
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0036819.
BDGP gene expression has embryonic in situ data for CG6856: 12 pix of staining in 3 body parts.
Homophila reports that CG6856 is a close match (2e-14) to human gene DTNBP1;HPS7 (NP_898861), a gene associated with Hermansky-Pudlak syndrome 7, 203300 (3);{Schizophrenia}, 181500 (2).
BioGrid reports that CG6856 interacts with CG9951 CG6905 CG7242 CG7386 CG7404 CG8831 CG8851 CG9170 .
VDRC has 3 RNAi stocks for FBgn0036819 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 04 of 4 0.50Down
Head30 14 of 4 0.80None
Eye31 14 of 4 0.79None
Thoracicoabdominal ganglion25 34 of 4 0.60Down
Salivary gland122 64 of 4 3.07Up
Crop47 44 of 4 1.20None
Midgut40 41 of 4 1.00None
Tubule60 44 of 4 1.50Up
Hindgut47 34 of 4 1.20None
Heart48 34 of 4 1.21None
Fat body72 54 of 4 1.82Up
Ovary70 44 of 4 1.80Up
Testis8 03 of 4 0.20Down
Male accessory glands79 44 of 4 2.00Up
Virgin spermatheca106 64 of 4 2.67Up
Mated spermatheca137 54 of 4 3.43Up
Adult carcass39 24 of 4 1.00None
Larval CNS20 34 of 4 0.50Down
Larval Salivary gland236 94 of 4 5.90Up
Larval midgut57 24 of 4 1.43Up
Larval tubule66 44 of 4 1.70Up
Larval hindgut76 34 of 4 1.90Up
Larval fat body45 34 of 4 1.10None
Larval trachea19 34 of 4 0.48Down
Larval carcass41 44 of 4 1.04None
S2 cells (growing)25 14 of 4 0.64Down
Whole fly40 44 of 4

Looking for CG6856-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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