Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6866-RA through 18771 annotations produced 1 hits



loquacious (loqs):

Annotation Number : CG6866
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032515
Gbrowse : chr2L:13382647-13385674 (+) // 100.0 //
Probeset : 1636788_a_at
Accessions : protein= NP_001033903; /// NP_609646; /// NP_723813;, nucleotide= NM_001038814; /// NM_135802; /// NM_165041;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0003725 // double-stranded RNA binding // inferred fro
FlyMine data for FBgn0032515.
BDGP gene expression has embryonic in situ data for CG6866: 14 pix of staining in 13 body parts.
Homophila reports that CG6866 is a close match (1e-16) to human gene DYT16;PACT;PRKRA;RAX (NP_003681), a gene associated with Dystonia 16, 612067 (3).
BioGrid reports that CG6866 interacts with CG6866 CG8273 CG8165 CG8298 CG9564 .
TRiP has 9 RNAi stocks for FBgn0032515 available for purchase.
VDRC has 2 RNAi stocks for FBgn0032515 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain619 124 of 4 2.80Up
Head551 144 of 4 2.50Up
Eye1207 574 of 4 5.47Up
Thoracicoabdominal ganglion702 134 of 4 3.20Up
Salivary gland202 54 of 4 0.92None
Crop410 154 of 4 1.90Up
Midgut95 54 of 4 0.40Down
Tubule92 54 of 4 0.40Down
Hindgut212 24 of 4 1.00None
Heart260 134 of 4 1.18Up
Fat body153 154 of 4 0.70Down
Ovary180 34 of 4 0.80Down
Testis801 154 of 4 3.60Up
Male accessory glands146 84 of 4 0.70Down
Virgin spermatheca81 24 of 4 0.37Down
Mated spermatheca103 44 of 4 0.47Down
Adult carcass132 34 of 4 0.60Down
Larval CNS632 314 of 4 2.86Up
Larval Salivary gland87 44 of 4 0.40Down
Larval midgut89 24 of 4 0.41Down
Larval tubule66 34 of 4 0.30Down
Larval hindgut135 84 of 4 0.61Down
Larval fat body125 474 of 4 0.60None
Larval trachea130 344 of 4 0.59Down
Larval carcass197 84 of 4 0.90None
S2 cells (growing)59 44 of 4 0.27Down
Whole fly220 54 of 4

Looking for CG6866-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime