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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6868-RA through 18771 annotations produced 1 hits



tolloid (tld):

Annotation Number : CG6868
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003719
Gbrowse : chr3R:20575455-20579234 (+) // 100.0 //
Probeset : 1624434_at
Accessions : protein= NP_524487;, nucleotide= NM_079763;
Pathway : oocyte
Interpro : soma encoded // inferred from mutant phenotype /// 0007352 // zygotic specification of dorsal/ventral axis // non-trace
FlyMine data for FBgn0003719.
BDGP gene expression has embryonic in situ data for tld: 36 pix of staining in 20 body parts.
Homophila reports that CG6868 is a close match (1e-11) to human gene ENTK;PRSS7 (NP_002763), a gene associated with Enterokinase deficiency, 226200 (3).
BioGrid reports that CG6868 interacts with CG9885 CG9224 CG6134 .
VDRC has 3 RNAi stocks for FBgn0003719 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain22 ± 14 of 418.60Up
Head9 ± 00 of 4 8.10Up
Eye7 ± 11 of 4 5.94Up
Thoracicoabdominal ganglion13 ± 23 of 411.00Up
Salivary gland5 ± 20 of 4 4.27None
Crop1 ± 00 of 4 1.20None
Midgut1 ± 00 of 4 1.60None
Tubule4 ± 10 of 4 3.70Up
Hindgut1 ± 00 of 4 1.30None
Heart10 ± 12 of 4 9.02Up
Fat body21 ± 62 of 417.65Up
Ovary1 ± 00 of 4 0.80None
Testis0 ± 00 of 4 0.40None
Male accessory glands1 ± 00 of 4 1.20None
Virgin spermatheca29 ± 84 of 424.65Up
Mated spermatheca11 ± 10 of 4 9.33Up
Adult carcass2 ± 00 of 4 2.30None
Larval CNS48 ± 84 of 440.40Up
Larval Salivary gland1 ± 00 of 4 1.29None
Larval midgut1 ± 00 of 4 1.50None
Larval tubule2 ± 10 of 4 1.80None
Larval hindgut2 ± 10 of 4 2.06None
Larval fat body14 ± 10 of 412.40Up
Larval trachea9 ± 11 of 4 7.85Up
Larval carcass23 ± 63 of 419.44Up
S2 cells (growing)0 ± 00 of 4 0.44None
Whole fly1 ± 00 of 4

Looking for CG6868-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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