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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6877-RA through 18771 annotations produced 1 hits



Autophagy-specific gene 3 (Aut1):

Annotation Number : CG6877
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036813
Gbrowse : chr3L:18741807-18743583 (+) // 100.0 //
Probeset : 1635143_at
Accessions : protein= NP_649059;, nucleotide= NM_140802;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
FlyMine data for FBgn0036813.
BDGP gene expression has embryonic in situ data for Aut1: 14 pix of staining in 11 body parts.
TRiP has 1 RNAi stocks for FBgn0036813 available for purchase.
VDRC has 2 RNAi stocks for FBgn0036813 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain411 134 of 4 1.60Up
Head387 84 of 4 1.50Up
Eye453 104 of 4 1.73Up
Thoracicoabdominal ganglion384 94 of 4 1.50Up
Salivary gland266 434 of 4 1.01None
Crop247 184 of 4 0.90None
Midgut1020 344 of 4 3.90Up
Tubule460 74 of 4 1.80Up
Hindgut338 74 of 4 1.30Up
Heart528 204 of 4 2.01Up
Fat body360 174 of 4 1.37Up
Ovary311 34 of 4 1.20Up
Testis88 14 of 4 0.30Down
Male accessory glands300 184 of 4 1.10None
Virgin spermatheca547 74 of 4 2.08Up
Mated spermatheca493 364 of 4 1.88Up
Adult carcass340 244 of 4 1.30Up
Larval CNS366 154 of 4 1.40Up
Larval Salivary gland278 304 of 4 1.06None
Larval midgut739 274 of 4 2.81Up
Larval tubule592 134 of 4 2.30Up
Larval hindgut246 164 of 4 0.94None
Larval fat body607 794 of 4 2.30Up
Larval trachea247 104 of 4 0.94None
Larval carcass229 184 of 4 0.87None
S2 cells (growing)291 114 of 4 1.11None
Whole fly262 144 of 4

Looking for CG6877-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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