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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6878-RA through 18771 annotations produced 1 hits



(CG6878):

Annotation Number : CG6878
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036488
Gbrowse : chr3L:15154914-15155571 (+) // 100.0 //
Probeset : 1624690_at
Accessions : protein= NP_648757;, nucleotide= NM_140500;
FlyMine data for FBgn0036488.
BioGrid reports that CG6878 interacts with CG9511 .
VDRC has 2 RNAi stocks for FBgn0036488 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain326 ± 104 of 4 1.30Up
Head235 ± 104 of 4 0.90None
Eye188 ± 44 of 4 0.74Down
Thoracicoabdominal ganglion501 ± 104 of 4 2.00Up
Salivary gland410 ± 114 of 4 1.62Up
Crop304 ± 164 of 4 1.20Up
Midgut328 ± 104 of 4 1.30Up
Tubule254 ± 124 of 4 1.00None
Hindgut349 ± 24 of 4 1.40Up
Heart229 ± 44 of 4 0.90None
Fat body257 ± 124 of 4 1.02None
Ovary300 ± 34 of 4 1.20Up
Testis852 ± 314 of 4 3.40Up
Male accessory glands182 ± 64 of 4 0.70Down
Virgin spermatheca226 ± 84 of 4 0.89None
Mated spermatheca232 ± 74 of 4 0.92None
Adult carcass212 ± 64 of 4 0.80Down
Larval CNS271 ± 144 of 4 1.07None
Larval Salivary gland202 ± 114 of 4 0.80Down
Larval midgut186 ± 244 of 4 0.73None
Larval tubule117 ± 104 of 4 0.50Down
Larval hindgut370 ± 284 of 4 1.46Up
Larval fat body248 ± 714 of 4 1.00None
Larval trachea203 ± 104 of 4 0.80Down
Larval carcass206 ± 204 of 4 0.81None
S2 cells (growing)347 ± 14 of 4 1.37Up
Whole fly254 ± 94 of 4

Looking for CG6878-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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