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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6888-RA through 18771 annotations produced 1 hits



(CG6888):

Annotation Number : CG6888
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036490
Gbrowse : chr3L:15200943-15201692 (+) // 100.0 //
Probeset : 1634769_at
Accessions : protein= NP_648759;, nucleotide= NM_140502;
Interpro : 0004601 // peroxidase activity // inferred from electronic annotation /// 0008379 // thioredoxin peroxidase activity //
FlyMine data for FBgn0036490.
VDRC has 2 RNAi stocks for FBgn0036490 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head1 00 of 4 0.00Down
Eye1 00 of 4 0.02Down
Thoracicoabdominal ganglion2 00 of 4 0.00Down
Salivary gland5 20 of 4 0.07Down
Crop1 00 of 4 0.00Down
Midgut2 00 of 4 0.00Down
Tubule2 00 of 4 0.00Down
Hindgut1 00 of 4 0.00Down
Heart5 10 of 4 0.08Down
Fat body3 30 of 4 0.04Down
Ovary2 10 of 4 0.00Down
Testis780 244 of 410.00Up
Male accessory glands1 00 of 4 0.00Down
Virgin spermatheca1 00 of 4 0.02Down
Mated spermatheca2 00 of 4 0.03Down
Adult carcass8 30 of 4 0.10Down
Larval CNS0 00 of 4 0.01Down
Larval Salivary gland5 10 of 4 0.07Down
Larval midgut1 00 of 4 0.01Down
Larval tubule2 10 of 4 0.00Down
Larval hindgut0 00 of 4 0.01Down
Larval fat body110 564 of 4 1.40None
Larval trachea3 51 of 4 0.05Down
Larval carcass1 00 of 4 0.02Down
S2 cells (growing)1 00 of 4 0.02Down
Whole fly78 54 of 4

Looking for CG6888-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime