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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG6896-RA through 18771 annotations produced 1 hits



MYPT-75D (MYPT-75D):

Annotation Number : CG6896
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036801
Gbrowse : chr3L:18619060-18660277 (+) // 100.0 //
Probeset : 1640082_at
Accessions : protein= NP_649049;, nucleotide= NM_140792;
Interpro : 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding //
FlyMine data for FBgn0036801.
Homophila reports that CG6896 is a close match (6e-12) to human gene INV;INVS;NPH2;NPHP2 (NP_055240), a gene associated with Nephronophthisis 2, infantile, 602088 (3).
TRiP has 1 RNAi stocks for FBgn0036801 available for purchase.
VDRC has 1 RNAi stocks for FBgn0036801 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain302 154 of 4 2.30Up
Head129 64 of 4 1.00None
Eye120 64 of 4 0.91None
Thoracicoabdominal ganglion277 64 of 4 2.10Up
Salivary gland613 404 of 4 4.63Up
Crop171 34 of 4 1.30Up
Midgut354 134 of 4 2.70Up
Tubule260 164 of 4 2.00Up
Hindgut236 64 of 4 1.80Up
Heart40 54 of 4 0.31Down
Fat body32 54 of 4 0.24Down
Ovary267 44 of 4 2.00Up
Testis24 24 of 4 0.20Down
Male accessory glands82 34 of 4 0.60Down
Virgin spermatheca250 124 of 4 1.89Up
Mated spermatheca282 364 of 4 2.13Up
Adult carcass54 44 of 4 0.40Down
Larval CNS100 74 of 4 0.76Down
Larval Salivary gland114 114 of 4 0.86None
Larval midgut359 184 of 4 2.71Up
Larval tubule113 64 of 4 0.90None
Larval hindgut153 114 of 4 1.16None
Larval fat body12 13 of 4 0.10Down
Larval trachea59 94 of 4 0.45Down
Larval carcass82 64 of 4 0.62Down
S2 cells (growing)12 04 of 4 0.09Down
Whole fly132 84 of 4

Looking for CG6896-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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